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idps  (Inscopix Inc)

 
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    Inscopix Inc idps
    Idps, supplied by Inscopix Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+preprocessing+software+(idps/idps/pmc13167472-452-6-7
    Average 86 stars, based on 1 article reviews
    idps - by Bioz Stars, 2026-09
    86/100 stars

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    Article Title: Psilocybin-enhanced fear extinction linked to bidirectional modulation of cortical ensembles.
    Article Snippet: The psychedelic drug psilocybin demonstrates rapid and long-lasting efficacy across neuropsychiatric disorders that are characterized by behavioral inflexibility.. However, its impact on the neural activity underlying sustained changes in behavioral flexibility has not been characterized.. To test whether psilocybin enhances behavioral flexibility by altering activity in cortical neural ensembles, we performed longitudinal single-cell calcium imaging in the mouse retrosplenial cortex across a 5-day trace fear learning and extinction assay.

    Article Title: Genetically- and spatially-defined basolateral amygdala neurons control food consumption and social interaction
    Article Snippet: We used the IDPS (Inscopix data processing software, version 1.8.0) for the acquisition of calcium image data, rigid motion correction, automatic selection of neuro somata as the regions of interests (ROIs), and extraction of raw calcium traces by using option, Cnmfe in IDPS and visual inspection with their tracing and morphology.

    Article Title: Major Depressive Disorder associated dysregulation of ZBTB7A in orbitofrontal cortex promotes astrocyte-mediated stress susceptibility
    Article Snippet: Inscopix IDPS v25.1.4 , Inscopix , https://www.inscopix.com/products/software/.



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    data preprocessing software (idps  (Inscopix Inc)
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    Inscopix Inc data preprocessing software (idps
    (A) Key parameters involved in each of the three major <t>data</t> processing stages from data collection to assessment of selectivity. (B) Using a single coordinate to characterize the position of the mouse in the maze: head-centroid position versus body-centroid position. (C) Non-binned calcium transients (top) versus 1s-binned calcium transients (bottom). The 1s-binned calcium transients were obtained by averaging values in a moving 1-second window. (D) Illustration of the types of neural data investigated in the current study. Raw Ca traces and Ca events were preprocessed and output directly from <t>Inscopix</t> Data <t>Preprocessing</t> <t>Software</t> (IDPS). Convolved Ca events were obtained by applying a convolution kernel to the Ca events. Ca traces analyzed in the current study referred to the lowpass-subtracted rectified Ca traces, which were obtained by subtracting the low-pass component from the raw Ca traces and rectifying them. (E) Illustration of the number-matched method. The time spent in open arms is shown by gray bars. Yellow bars refer to random subsets of closed-arm bouts. (F) Representations of the procedures of the four shuffling methods, arranged from the lowest degree of randomness to the highest degree of randomness.
    Data Preprocessing Software (Idps, supplied by Inscopix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/data+preprocessing+software+(idps/data+preprocessing+software++idps/bio_rxiv__2024__11__30__626195-201-7-7
    Average 90 stars, based on 1 article reviews
    data preprocessing software (idps - by Bioz Stars, 2026-09
    90/100 stars
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    (A) Key parameters involved in each of the three major data processing stages from data collection to assessment of selectivity. (B) Using a single coordinate to characterize the position of the mouse in the maze: head-centroid position versus body-centroid position. (C) Non-binned calcium transients (top) versus 1s-binned calcium transients (bottom). The 1s-binned calcium transients were obtained by averaging values in a moving 1-second window. (D) Illustration of the types of neural data investigated in the current study. Raw Ca traces and Ca events were preprocessed and output directly from Inscopix Data Preprocessing Software (IDPS). Convolved Ca events were obtained by applying a convolution kernel to the Ca events. Ca traces analyzed in the current study referred to the lowpass-subtracted rectified Ca traces, which were obtained by subtracting the low-pass component from the raw Ca traces and rectifying them. (E) Illustration of the number-matched method. The time spent in open arms is shown by gray bars. Yellow bars refer to random subsets of closed-arm bouts. (F) Representations of the procedures of the four shuffling methods, arranged from the lowest degree of randomness to the highest degree of randomness.

    Journal: bioRxiv

    Article Title: Robust characterization of selectivity of individual neurons to distinct task-relevant behavioral states using calcium imaging

    doi: 10.1101/2024.11.30.626195

    Figure Lengend Snippet: (A) Key parameters involved in each of the three major data processing stages from data collection to assessment of selectivity. (B) Using a single coordinate to characterize the position of the mouse in the maze: head-centroid position versus body-centroid position. (C) Non-binned calcium transients (top) versus 1s-binned calcium transients (bottom). The 1s-binned calcium transients were obtained by averaging values in a moving 1-second window. (D) Illustration of the types of neural data investigated in the current study. Raw Ca traces and Ca events were preprocessed and output directly from Inscopix Data Preprocessing Software (IDPS). Convolved Ca events were obtained by applying a convolution kernel to the Ca events. Ca traces analyzed in the current study referred to the lowpass-subtracted rectified Ca traces, which were obtained by subtracting the low-pass component from the raw Ca traces and rectifying them. (E) Illustration of the number-matched method. The time spent in open arms is shown by gray bars. Yellow bars refer to random subsets of closed-arm bouts. (F) Representations of the procedures of the four shuffling methods, arranged from the lowest degree of randomness to the highest degree of randomness.

    Article Snippet: Raw movie data were preprocessed using the Inscopix Data Preprocessing Software (IDPS).

    Techniques: Software