Injection:Article Title: Transcranial Low-Intensity Focused Ultrasound Stimulation of the Visual Thalamus Produces Long-Term Depression of Thalamocortical Synapses in the Adult Visual Cortex
Article Snippet: .. For a group of mice, NMDAR antagonist D-4-[(2E)-3-phosphono-2-propenyl]2-piperazinecarboxylic acid (D-CPP; Tocris Biosciences catalog #1265) was injected intraperitoneally (i.p., 10 mg/kg) 10–20 min prior to the LIFU stimulation to test the role of NMDARs. ..
Transmission Assay:Article Title: Spike-timing-dependent plasticity rewards synchrony rather than causality
Article Snippet: .. Whole cell currents were recorded (see electrophysiology below) with synaptic transmission and action potentials blocked by CPPene (10 μM, Tocris bioscience; 1265), NBQX (10 μM, Tocris bioscience; 1044), picrotoxin (100 μM, Sigma; P1675-1G) and tetrodotoxin (1 μM, HelloBio; HB1035). ..
Blocking Assay:Article Title: PACmn for improved optogenetic control of intracellular cAMP
Article Snippet: .. Recording temperature was 29 ± 1°C, and a mix of picrotoxin (100 μM), NBQX (10 μM), and CPPene (10 μM) (Tocris) was added to the extracellular solution to block synaptic responses. .. Where indicated, forskolin (FSK; 100 μM) and 3-isobutyl-1-methylxanthine (IBMX; 75 μM) (HelloBio) were added from concentrated stock solutions or an equivalent amount of dimethylsulfoxide (DMSO).
Virus:Article Title: Optimized Design and in Vivo Application of Optogenetically Modified Drosophila Dopamine Receptors to Elucidate Endogenous Functions
Article Snippet: .. ©@ CelPress STAR* METHODS KEY RESOURCES TABLE Neuron REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains rAAV2/18&2.CamKlla(0.4).OPN3-mScarlet This paper N/A rAAV2/1&2.CamKlla..eYFP.WPRE This paper N/A rAAV2/1&2.CamKla(0.4).eOPN3-mScarlet This paper www.addgene.org/125712/ rAAV2/1&2.hSyn.SIO-eOPN3-mScarlet This paper www.addgene.org/125713/ Chemicals, peptides, and recombinant proteins (R)-baclofen Tocris Cat#0796 Clozapine-N-Oxide Enzo Life Science Cat#-BML-NS105 CPPene Tocris Cat#1265 Gabazine Tocris Cat#1262 NBQX Tocris Cat#1044 Pertussis toxin Sigma-Aldrich Cat#516560 Picrotoxin Tocris Cat#1128 SCH23390 Tocris Cat#0925 Critical commercial assays GloSensor cAMP Assay Promega Cat#E1171 Experimental models: Cell lines HEK293T Sigma-Aldrich Cat#12022001 RRID:CVCL_0063 Experimental models: Organisms/strains Mouse: C57BL/6JRecHsd Envigo Cat#043 Mouse: C57BL/6NHsd Envigo Cat#044 Mouse: DAT-IRES-Cre The Jackson Laboratory Strain #006660 Rattus norvegicus: Sprague-Dawley Envigo Cat#002 Rattus norvegicus: Wistar Charles River, bred in the Cat#003 animal facility, UKE Hamburg Recombinant DNA pAAV-CaMkKlla(0.4)-OPN3-mScarlet This Paper N/A pAAV-CaMkKlla(0.4)-PufTMT3a-mScarlet This Paper N/A pAAV-CaMKlla(0.4)-OPN3-M4-mScarlet This Paper N/A pAAV-CaMKlla(0.4)-PufTMT3a-M4-mScarlet This Paper N/A pAAV-CamKlla-eYFP. pcDNA3.1-GIRK2-1 pcDNA3.1-mCerulean pAAV-CaMKlla(0.4)-eOPN3-mScarlet pAAV-hSyn-SIO-eOPN3-mScarlet Software and algorithms Fiji MATLAB 2018b Prism 8.2.1 RStudio Desktop Ephus. .. WaveSurfer e1 Neuron 109, 1621-1635.e1-e8, May 19, 2021 Karl Deisseroth Eitan Reuveny Dave Piston; Rizzo et al.,2004 This Paper This Paper Schindelin et al., 2012 Mathworks Graphpad RStudio Suter et al., 2010 Janelia 117 RRID:Addgene_105622; www.addgene.org/105622 GenBank: NM_001025584.2 RRID:Addgene_15214; www.addgene.org/15214/ RRID:Addgene_125712; www.addgene.org/125712/ RRID:Addgene_125713; www.addgene.org/125713/ RRID:SCR_0022885; http://imagej.net/Fiji RRID:SCR_001622; www.mathworks.com RRID:SCR_002798; https://www.graphpad.com RRID:SCR_000432; https://www.rstudio.com https://doi.org/10.3389/fncir.2010.00100 https://wavesurfer.janelia.org (Continued on next page)
Recombinant:Article Title: Optimized Design and in Vivo Application of Optogenetically Modified Drosophila Dopamine Receptors to Elucidate Endogenous Functions
Article Snippet: .. ©@ CelPress STAR* METHODS KEY RESOURCES TABLE Neuron REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains rAAV2/18&2.CamKlla(0.4).OPN3-mScarlet This paper N/A rAAV2/1&2.CamKlla..eYFP.WPRE This paper N/A rAAV2/1&2.CamKla(0.4).eOPN3-mScarlet This paper www.addgene.org/125712/ rAAV2/1&2.hSyn.SIO-eOPN3-mScarlet This paper www.addgene.org/125713/ Chemicals, peptides, and recombinant proteins (R)-baclofen Tocris Cat#0796 Clozapine-N-Oxide Enzo Life Science Cat#-BML-NS105 CPPene Tocris Cat#1265 Gabazine Tocris Cat#1262 NBQX Tocris Cat#1044 Pertussis toxin Sigma-Aldrich Cat#516560 Picrotoxin Tocris Cat#1128 SCH23390 Tocris Cat#0925 Critical commercial assays GloSensor cAMP Assay Promega Cat#E1171 Experimental models: Cell lines HEK293T Sigma-Aldrich Cat#12022001 RRID:CVCL_0063 Experimental models: Organisms/strains Mouse: C57BL/6JRecHsd Envigo Cat#043 Mouse: C57BL/6NHsd Envigo Cat#044 Mouse: DAT-IRES-Cre The Jackson Laboratory Strain #006660 Rattus norvegicus: Sprague-Dawley Envigo Cat#002 Rattus norvegicus: Wistar Charles River, bred in the Cat#003 animal facility, UKE Hamburg Recombinant DNA pAAV-CaMkKlla(0.4)-OPN3-mScarlet This Paper N/A pAAV-CaMkKlla(0.4)-PufTMT3a-mScarlet This Paper N/A pAAV-CaMKlla(0.4)-OPN3-M4-mScarlet This Paper N/A pAAV-CaMKlla(0.4)-PufTMT3a-M4-mScarlet This Paper N/A pAAV-CamKlla-eYFP. pcDNA3.1-GIRK2-1 pcDNA3.1-mCerulean pAAV-CaMKlla(0.4)-eOPN3-mScarlet pAAV-hSyn-SIO-eOPN3-mScarlet Software and algorithms Fiji MATLAB 2018b Prism 8.2.1 RStudio Desktop Ephus. .. WaveSurfer e1 Neuron 109, 1621-1635.e1-e8, May 19, 2021 Karl Deisseroth Eitan Reuveny Dave Piston; Rizzo et al.,2004 This Paper This Paper Schindelin et al., 2012 Mathworks Graphpad RStudio Suter et al., 2010 Janelia 117 RRID:Addgene_105622; www.addgene.org/105622 GenBank: NM_001025584.2 RRID:Addgene_15214; www.addgene.org/15214/ RRID:Addgene_125712; www.addgene.org/125712/ RRID:Addgene_125713; www.addgene.org/125713/ RRID:SCR_0022885; http://imagej.net/Fiji RRID:SCR_001622; www.mathworks.com RRID:SCR_002798; https://www.graphpad.com RRID:SCR_000432; https://www.rstudio.com https://doi.org/10.3389/fncir.2010.00100 https://wavesurfer.janelia.org (Continued on next page)
cAMP Assay:Article Title: Optimized Design and in Vivo Application of Optogenetically Modified Drosophila Dopamine Receptors to Elucidate Endogenous Functions
Article Snippet: .. ©@ CelPress STAR* METHODS KEY RESOURCES TABLE Neuron REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains rAAV2/18&2.CamKlla(0.4).OPN3-mScarlet This paper N/A rAAV2/1&2.CamKlla..eYFP.WPRE This paper N/A rAAV2/1&2.CamKla(0.4).eOPN3-mScarlet This paper www.addgene.org/125712/ rAAV2/1&2.hSyn.SIO-eOPN3-mScarlet This paper www.addgene.org/125713/ Chemicals, peptides, and recombinant proteins (R)-baclofen Tocris Cat#0796 Clozapine-N-Oxide Enzo Life Science Cat#-BML-NS105 CPPene Tocris Cat#1265 Gabazine Tocris Cat#1262 NBQX Tocris Cat#1044 Pertussis toxin Sigma-Aldrich Cat#516560 Picrotoxin Tocris Cat#1128 SCH23390 Tocris Cat#0925 Critical commercial assays GloSensor cAMP Assay Promega Cat#E1171 Experimental models: Cell lines HEK293T Sigma-Aldrich Cat#12022001 RRID:CVCL_0063 Experimental models: Organisms/strains Mouse: C57BL/6JRecHsd Envigo Cat#043 Mouse: C57BL/6NHsd Envigo Cat#044 Mouse: DAT-IRES-Cre The Jackson Laboratory Strain #006660 Rattus norvegicus: Sprague-Dawley Envigo Cat#002 Rattus norvegicus: Wistar Charles River, bred in the Cat#003 animal facility, UKE Hamburg Recombinant DNA pAAV-CaMkKlla(0.4)-OPN3-mScarlet This Paper N/A pAAV-CaMkKlla(0.4)-PufTMT3a-mScarlet This Paper N/A pAAV-CaMKlla(0.4)-OPN3-M4-mScarlet This Paper N/A pAAV-CaMKlla(0.4)-PufTMT3a-M4-mScarlet This Paper N/A pAAV-CamKlla-eYFP. pcDNA3.1-GIRK2-1 pcDNA3.1-mCerulean pAAV-CaMKlla(0.4)-eOPN3-mScarlet pAAV-hSyn-SIO-eOPN3-mScarlet Software and algorithms Fiji MATLAB 2018b Prism 8.2.1 RStudio Desktop Ephus. .. WaveSurfer e1 Neuron 109, 1621-1635.e1-e8, May 19, 2021 Karl Deisseroth Eitan Reuveny Dave Piston; Rizzo et al.,2004 This Paper This Paper Schindelin et al., 2012 Mathworks Graphpad RStudio Suter et al., 2010 Janelia 117 RRID:Addgene_105622; www.addgene.org/105622 GenBank: NM_001025584.2 RRID:Addgene_15214; www.addgene.org/15214/ RRID:Addgene_125712; www.addgene.org/125712/ RRID:Addgene_125713; www.addgene.org/125713/ RRID:SCR_0022885; http://imagej.net/Fiji RRID:SCR_001622; www.mathworks.com RRID:SCR_002798; https://www.graphpad.com RRID:SCR_000432; https://www.rstudio.com https://doi.org/10.3389/fncir.2010.00100 https://wavesurfer.janelia.org (Continued on next page)
Software:Article Title: Optimized Design and in Vivo Application of Optogenetically Modified Drosophila Dopamine Receptors to Elucidate Endogenous Functions
Article Snippet: .. ©@ CelPress STAR* METHODS KEY RESOURCES TABLE Neuron REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains rAAV2/18&2.CamKlla(0.4).OPN3-mScarlet This paper N/A rAAV2/1&2.CamKlla..eYFP.WPRE This paper N/A rAAV2/1&2.CamKla(0.4).eOPN3-mScarlet This paper www.addgene.org/125712/ rAAV2/1&2.hSyn.SIO-eOPN3-mScarlet This paper www.addgene.org/125713/ Chemicals, peptides, and recombinant proteins (R)-baclofen Tocris Cat#0796 Clozapine-N-Oxide Enzo Life Science Cat#-BML-NS105 CPPene Tocris Cat#1265 Gabazine Tocris Cat#1262 NBQX Tocris Cat#1044 Pertussis toxin Sigma-Aldrich Cat#516560 Picrotoxin Tocris Cat#1128 SCH23390 Tocris Cat#0925 Critical commercial assays GloSensor cAMP Assay Promega Cat#E1171 Experimental models: Cell lines HEK293T Sigma-Aldrich Cat#12022001 RRID:CVCL_0063 Experimental models: Organisms/strains Mouse: C57BL/6JRecHsd Envigo Cat#043 Mouse: C57BL/6NHsd Envigo Cat#044 Mouse: DAT-IRES-Cre The Jackson Laboratory Strain #006660 Rattus norvegicus: Sprague-Dawley Envigo Cat#002 Rattus norvegicus: Wistar Charles River, bred in the Cat#003 animal facility, UKE Hamburg Recombinant DNA pAAV-CaMkKlla(0.4)-OPN3-mScarlet This Paper N/A pAAV-CaMkKlla(0.4)-PufTMT3a-mScarlet This Paper N/A pAAV-CaMKlla(0.4)-OPN3-M4-mScarlet This Paper N/A pAAV-CaMKlla(0.4)-PufTMT3a-M4-mScarlet This Paper N/A pAAV-CamKlla-eYFP. pcDNA3.1-GIRK2-1 pcDNA3.1-mCerulean pAAV-CaMKlla(0.4)-eOPN3-mScarlet pAAV-hSyn-SIO-eOPN3-mScarlet Software and algorithms Fiji MATLAB 2018b Prism 8.2.1 RStudio Desktop Ephus. .. WaveSurfer e1 Neuron 109, 1621-1635.e1-e8, May 19, 2021 Karl Deisseroth Eitan Reuveny Dave Piston; Rizzo et al.,2004 This Paper This Paper Schindelin et al., 2012 Mathworks Graphpad RStudio Suter et al., 2010 Janelia 117 RRID:Addgene_105622; www.addgene.org/105622 GenBank: NM_001025584.2 RRID:Addgene_15214; www.addgene.org/15214/ RRID:Addgene_125712; www.addgene.org/125712/ RRID:Addgene_125713; www.addgene.org/125713/ RRID:SCR_0022885; http://imagej.net/Fiji RRID:SCR_001622; www.mathworks.com RRID:SCR_002798; https://www.graphpad.com RRID:SCR_000432; https://www.rstudio.com https://doi.org/10.3389/fncir.2010.00100 https://wavesurfer.janelia.org (Continued on next page)
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