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custom-designed oligonucleotide microarray genomedx v5  (GenomeDx Inc)

 
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    GenomeDx Inc custom-designed oligonucleotide microarray genomedx v5
    Custom Designed Oligonucleotide Microarray Genomedx V5, supplied by GenomeDx Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/custom+microarray+design+services/custom+designed+oligonucleotide+microarray+genomedx+v5/pmc05876472-48-7-9
    Average 90 stars, based on 1 article reviews
    custom-designed oligonucleotide microarray genomedx v5 - by Bioz Stars, 2026-11
    90/100 stars

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    other:

    Article Title: Ring Chromosome 17 Syndrome—A Case Report and Discussion of Diagnostic Methods
    Article Snippet: Whole-genome comparative genomic hybridization (array comparative genomic hybridization [aCGH]) and genotype analysis (custom-designed oligonucleotide microarray—GenomeDX v5) performed on a blood sample showed a 1759 Mb arr[GRCh37] 17p13.3 (48,858–1,807,652)×1 deletion classified as pathogenic, and fluorescence in situ hybridization (FISH) analysis on parental samples using probes RP11–1061C17 (17p13.3) and RP11–1087N2 (17q25.3) revealed a normal hybridization pattern confirming the de novo nature of the deletion.

    Article Title: Ring Chromosome 17 Syndrome-A Case Report and Discussion of Diagnostic Methods.
    Article Snippet: Whole- genome comparative genomic hybridization (array comparative genomic hybridization [aCGH]) and genotype analysis (custom- designed oligonucleotide microarray—GenomeDX v5) performed on a blood sample showed a 1759 Mb arr[GRCh37] 17p13.3 (48,858- 1,807,652)x1 deletion classified as pathogenic, and fluorescence in situ hybridization (FISH) analysis on parental samples using probes RP11- 1061C17 (17p13.3) and RP11- 1087N2 (17q25.3) revealed a normal hybridization pattern confirming the de novo nature of the deletion.

    Article Title: Bone marrow transplantation reverses metabolic alterations in multiple sulfatase deficiency: a case series.
    Article Snippet: Molecular Chromosomal microarray Whole genome array-based comparative genomic hybridization (aCGH) and genotype analyses are performedon a custom-designed oligonucleotide microarray (GenomeDx v5).

    Article Title: Bone marrow transplantation reverses metabolic alterations in multiple sulfatase deficiency: a case series.
    Article Snippet: Whole genome array-based comparative genomic hybridization (aCGH) and genotype analyses are performedon a custom-designed oligonucleotide microarray (GenomeDx v5).

    Article Title: Hereditary Myoclonus Dystonia: A Novel SGCE Variant and Phenotype Including Intellectual Disability
    Article Snippet: This test is performed on a custom-designed oligonucleotide microarray (GenomeDx v5) and the design is based on human genome build GRCh37/UCSChg19 and contains approximately 118,000 probes that provide copy number data and 66,000 probes that generate genotype information through analysis of SNPs.

    Article Title: Bone marrow transplantation reverses metabolic alterations in multiple sulfatase deficiency: a case series
    Article Snippet: Whole genome array-based comparative genomic hybridization (aCGH) and genotype analyses are performed on a custom-designed oligonucleotide microarray (GenomeDx v5).

    Microarray:

    Article Title: Mosaic Trisomy 16 Associated with Left Lung Agenesis, Abnormal Left Arm, and Right Pulmonary Artery Stenosis: Expanding the Phenotype and Review of the Literature
    Article Snippet: .. The CMA on foreskin was performed on a custom designed oligonucleotide microarray (GenomeDx v5). ..

    Article Title: Mosaic Trisomy 16 Associated with Left Lung Agenesis, Abnormal Left Arm, and Right Pulmonary Artery Stenosis: Expanding the Phenotype and Review of the Literature
    Article Snippet: .. Given normal postnatal studies on blood, array CGH and SNP microarray (GenomeDx v5) with an average resolution of approximately 35kb was performed on foreskin tissue and identified a mosaic gain of the entire chromosome 16, arr(16) × 2–3, consistent with mosaic trisomy 16. ..



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    A) Schematic representation of the daily distribution of metabolic processes resulting from the transcriptional signature of several differentially expressed genes throughout the 24-hour cycle. The different metabolic processes are indicated by gradiently colored arrows showing the time of the day corresponding to the higher expression levels of gene groups. The lengths of the arrows and darker colors indicate, respectively, intervals and peaks of expression. Local times are indicated at the bottom of the figure where an indicative representation of light intensity is also shown. The breakdown of energy-yielding nutrients (glycolysis, the Krebs cycle and the electron transport chain) and energy storage pathways (glycogen synthesis and fatty acid synthesis) are specifically activated in the early morning, while glycogen mobilization, gluconeogenesis and fatty acids catabolism are used as a stored energy source in the evening and throughout the night. B) Gene expression profiles of transcripts involved in energetic and metabolic processes are represented. The color of each gene corresponds to the metabolic process in which it is involved. Dashed lines indicate differentially expressed genes identified by a one-way ANOVA test, while solid lines represent differentially expressed genes characterized by a sinusoidal expression patterns detected by CircWaveBatch analysis. <t>Microarray</t> expression values are represented as log 2 mean ± standard deviation. Genes are represented with the following abbreviations: fructose 1,6-bisphosphatase ( FB ), glyceraldehyde-3-phosphate dehydrogenase ( GPD ), pyruvate kinase ( PK ), 6-phosphofructokinase ( 6P ), citrate synthase ( CS ), ATP synthase b ( ATP ), succinate dehydrogenase type C ( SD ), isocitrate dehydrogenase [NAD] subunit beta mitochondrial ( ID ), Acetyl-CoA acetyltransferase ( ACA ), short-chain specific acyl-CoA dehydrogenase ( ACD ), Acetyl-CoA carboxylase ( ACC ), ATP citrate lyase subunit beta ( ACL ), glycogen debranching enzyme-like ( GDE ), glycogen synthase ( GS ), and Glycogenin-1 ( G ).
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    A) Schematic representation of the daily distribution of metabolic processes resulting from the transcriptional signature of several differentially expressed genes throughout the 24-hour cycle. The different metabolic processes are indicated by gradiently colored arrows showing the time of the day corresponding to the higher expression levels of gene groups. The lengths of the arrows and darker colors indicate, respectively, intervals and peaks of expression. Local times are indicated at the bottom of the figure where an indicative representation of light intensity is also shown. The breakdown of energy-yielding nutrients (glycolysis, the Krebs cycle and the electron transport chain) and energy storage pathways (glycogen synthesis and fatty acid synthesis) are specifically activated in the early morning, while glycogen mobilization, gluconeogenesis and fatty acids catabolism are used as a stored energy source in the evening and throughout the night. B) Gene expression profiles of transcripts involved in energetic and metabolic processes are represented. The color of each gene corresponds to the metabolic process in which it is involved. Dashed lines indicate differentially expressed genes identified by a one-way ANOVA test, while solid lines represent differentially expressed genes characterized by a sinusoidal expression patterns detected by CircWaveBatch analysis. Microarray expression values are represented as log 2 mean ± standard deviation. Genes are represented with the following abbreviations: fructose 1,6-bisphosphatase ( FB ), glyceraldehyde-3-phosphate dehydrogenase ( GPD ), pyruvate kinase ( PK ), 6-phosphofructokinase ( 6P ), citrate synthase ( CS ), ATP synthase b ( ATP ), succinate dehydrogenase type C ( SD ), isocitrate dehydrogenase [NAD] subunit beta mitochondrial ( ID ), Acetyl-CoA acetyltransferase ( ACA ), short-chain specific acyl-CoA dehydrogenase ( ACD ), Acetyl-CoA carboxylase ( ACC ), ATP citrate lyase subunit beta ( ACL ), glycogen debranching enzyme-like ( GDE ), glycogen synthase ( GS ), and Glycogenin-1 ( G ).

    Journal: PLoS ONE

    Article Title: The Antarctic Krill Euphausia superba Shows Diurnal Cycles of Transcription under Natural Conditions

    doi: 10.1371/journal.pone.0068652

    Figure Lengend Snippet: A) Schematic representation of the daily distribution of metabolic processes resulting from the transcriptional signature of several differentially expressed genes throughout the 24-hour cycle. The different metabolic processes are indicated by gradiently colored arrows showing the time of the day corresponding to the higher expression levels of gene groups. The lengths of the arrows and darker colors indicate, respectively, intervals and peaks of expression. Local times are indicated at the bottom of the figure where an indicative representation of light intensity is also shown. The breakdown of energy-yielding nutrients (glycolysis, the Krebs cycle and the electron transport chain) and energy storage pathways (glycogen synthesis and fatty acid synthesis) are specifically activated in the early morning, while glycogen mobilization, gluconeogenesis and fatty acids catabolism are used as a stored energy source in the evening and throughout the night. B) Gene expression profiles of transcripts involved in energetic and metabolic processes are represented. The color of each gene corresponds to the metabolic process in which it is involved. Dashed lines indicate differentially expressed genes identified by a one-way ANOVA test, while solid lines represent differentially expressed genes characterized by a sinusoidal expression patterns detected by CircWaveBatch analysis. Microarray expression values are represented as log 2 mean ± standard deviation. Genes are represented with the following abbreviations: fructose 1,6-bisphosphatase ( FB ), glyceraldehyde-3-phosphate dehydrogenase ( GPD ), pyruvate kinase ( PK ), 6-phosphofructokinase ( 6P ), citrate synthase ( CS ), ATP synthase b ( ATP ), succinate dehydrogenase type C ( SD ), isocitrate dehydrogenase [NAD] subunit beta mitochondrial ( ID ), Acetyl-CoA acetyltransferase ( ACA ), short-chain specific acyl-CoA dehydrogenase ( ACD ), Acetyl-CoA carboxylase ( ACC ), ATP citrate lyase subunit beta ( ACL ), glycogen debranching enzyme-like ( GDE ), glycogen synthase ( GS ), and Glycogenin-1 ( G ).

    Article Snippet: Probes were designed using the Agilent eArray Custom Microarray Design Service ( https://earray.chem.agilent.com/earray/index.jsp ), which applies proprietary prediction algorithms to design 60 mer oligo-probes.

    Techniques: Expressing, Microarray, Standard Deviation