computer code data collection commercial software 1 akoya biosciences pcf (Akoya Biosciences)

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Akoya Biosciences computer code data collection commercial software 1 akoya biosciences pcf
Computer Code Data Collection Commercial Software 1 Akoya Biosciences Pcf, supplied by Akoya Biosciences, used in various techniques. Bioz Stars score: 99/100, based on 12644 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/computer+software+data/PhenoCycler-Fusion+2%2E0/pm41073787-489-8-15
Average 99 stars, based on 12644 article reviews

computer code data collection commercial software 1 akoya biosciences pcf - by Bioz Stars, 2026-11

99/100 stars

Images

Software:

Article Title: Intratumor delivery of a novel plasmid combination induces high levels of metastatic melanoma regression.
Article Snippet: Secondary antibodies used include HRP goat anti-rat IgG (Biolegend, San Diego, CA, USA, Poly4054) and HRP goat antirabbit IgG H&L (polyclonal antibody, Abcam, Waltham, MA, USA, ab205718). .. Sections were imaged using the PhenoCycler-Fusion system (Akoya Biosciences) at a 40x (0.25 μm) resolution using Fusion software version 2.2.0 (Akoya Biosciences). .. Spectral unmixing, background autofluorescence removal, and image finalization were performed utilizing Phenochart version 2.0.1, Inform version 3.0, and QuPath version 0.5.0 44 (Akoya Biosciences) [14].

96 Well Plates:

Article Title: NicheSphere reveals an Spp1-centered multicellular niche in myeloproliferative neoplasm-associated fibrosis
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER PROGENy v1.20.0 Schubert et al.44 https://saezlab.github.io/progeny/ DoubletFinder v2.0.3 McGinnis et al.45 DoubletFinder (RRID:SCR_018771) DecontX (from celda package) v1.14.2 celda46 celda (RRID:SCR_028952) Harmony v1.0 https://github.com/immunogenomics/ harmony Harmony (RRID:SCR_022206) QuPath Bankhead et al.47 RRID:SCR_018257 ImageJ/Fiji Schindelin et al.48 RRID:SCR_002285 R/RStudio 2022.07.1 RStudio/Posit RRID:SCR_001905 (R); RRID:SCR_000432 (RStudio) FlowJo v10.10.0 BD Biosciences RRID:SCR_008520, https://www. .. bdbiosciences.com/en-us/products/ software/flowjo-software?tab=flowjo-v10software GraphPad Prism v11 GraphPad Software, LLC RRID:SCR_002798 NDP.view2, v2.5.19 Hamamatsu U12388-01 Other 50kDa MWCO centrifugal filters Thermo Fisher Scientific Cat# UFC505096 Ultra-low attachment 96-well plates Corning Cat# 7007 K2EDTA Microtainer tubes BD Biosciences Cat# 365974 BD FACS ARIAIII cell sorter BD Biosciences N/A BD LSRFortessa flow cytometer BD Biosciences N/A BD FACSMelody BD Biosciences N/A PhenoCycler Fusion system Akoya Biosciences N/A Horiba SciI Vet abc Plus hematology analyzer Horiba N/A Bio-Rad CFX384 Real-Time PCR system Bio-Rad N/A Novaseq6000 platform Illumina N/A Nanozoomer 2.0 hT system Hamamatsu N/A Cell Press Blue 2, 100146, January 25, 2027 e5 Article ll OPEN ACCESS ..

FACS:

Flow Cytometry:

Real-time Polymerase Chain Reaction:

other:

Article Title: Artificial intelligence in spatial transcriptomics: a review of methods, datasets, and directions.
Article Snippet: Houston A. Akoya Biosciences PhenoCycler Fusion (Formerly CODEX) User Guide v1.

Multiplex Assay:

Article Title: Benchmarking cell segmentation in two Spatialomics platforms with open-source software
Article Snippet: .. Over the past decade, rapid advances in multiplex imaging platforms, such as Lunaphore COMET, IonPath MIBIscope, and Akoya Biosciences PhenoCycler-Fusion (formerly CODEX), have substantially expanded the Article in Press Scientific Reports https://doi.org/10.1038/s41598-026-70919-2 detection modalities, scale, and dimensionality of tissue profiling. ..

Imaging:

Tissue:

Profiling:

Formalin-fixed Paraffin-Embedded:

Article Title: Spatial proteomics identifies altered thick ascending limb cells as drivers of kidney disease through uromodulin retention
Article Snippet: .. The latest PhenoCycler-Fusion (PCF) 2.0 platform (Akoya Biosciences) was used as described recently( , ), with modifications to accommodate FFPE tissues instead of OCT-embedded samples. .. Mouse FFPE kidney sections (5 μm thickness) were cut using a microtome and mounted on Superfrost Plus Gold slides (Thermo Fisher Scientific, #1518848).

Staining:

Article Title: Microglia with distinct origins and non-canonical phenotypes coexist within the border-like niche of the brain's circumventricular organs.
Article Snippet: During this pre-blocking step, the antibody cocktail was prepared with optimal dilutions of each antibody in a buffer containing N (1:42 v/v), J (1:42 v/v), S (1:42 v/v) and G STEP (1:42 v/v) blockers (#7000017; Akoya Biosciences) following the manufacturer’s instructions. .. Reporter Stock solution was prepared as described in the PhenoCycler-Fusion User Guide with 1x phenocycler buffer (#7000019, Akoya Biosciences), Assay Reagent (#7000002, Akoya Biosciences), and Nuclear Stain (#7000003, Akoya Biosciences) from Akoya Biosciences. .. Custom conjugation of antibodies was performed using Akoya’s Antibody conjugation kit (#7000009, Akoya Biosciences) following the manufacturer’s instructions.

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