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codelink software package  (Agilent technologies)


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    Structured Review

    Agilent technologies codelink software package
    Codelink Software Package, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/codelink+software+package/pm17618285-207-7-12
    Average 90 stars, based on 1 article reviews
    codelink software package - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: Transcriptional Profiling of Human Familial Longevity Indicates a Role for ASF1A and IL7R
    Article Snippet: The 150 samples that met the RNA quality criteria were hybridized onto 54k CodeLink Human Whole Genome Bioarrays (GE Healthcare, Bucks, UK, cat. No. 300026, currently of Applied Microarrays). cDNA synthesis, amplification, biotin labeling and hybridization onto the microarrays were performed according to the manufacturer's instructions using the Codelink iExpress reagent kit (cat. No. 67601000). .. The slides were scanned with a MicroArray Scanner G2505B scanner (Agilent Technologies, South Queensferry, UK) and the image was quantified with the CodeLink Expression software (version 4.2). ..

    Article Title: Chemosensitivity prediction in esophageal squamous cell carcinoma: Novel marker genes and efficacy-prediction formulae using their expression data
    Article Snippet: Ten-micrograms of cRNA was then fragmented and hybridized to a CodelinkTM Uniset Human 20K I Bioarray containing 19,981 probes with positive and negative bacterial control probes. .. After hybridization, the arrays were rinsed and labeled with Streptavidin-Cy5, scanned using Agilent DNA Microarray Scanner (Agilent), and then analyzed with Codelink Expression Analysis Software. ..

    Expressing:

    Article Title: Transcriptional Profiling of Human Familial Longevity Indicates a Role for ASF1A and IL7R
    Article Snippet: The 150 samples that met the RNA quality criteria were hybridized onto 54k CodeLink Human Whole Genome Bioarrays (GE Healthcare, Bucks, UK, cat. No. 300026, currently of Applied Microarrays). cDNA synthesis, amplification, biotin labeling and hybridization onto the microarrays were performed according to the manufacturer's instructions using the Codelink iExpress reagent kit (cat. No. 67601000). .. The slides were scanned with a MicroArray Scanner G2505B scanner (Agilent Technologies, South Queensferry, UK) and the image was quantified with the CodeLink Expression software (version 4.2). ..

    Article Title: Microarray analysis in B cells among siblings with/without MS - role for transcription factor TCF2
    Article Snippet: The arrays were subsequently washed, stained with Cy5-Streptavidin (GE Amersham) and scanned on an Axon Genepix 4000B scanner. .. The data were collected using Codelink Expression Analysis software and analyzed using Genespring software version 7.3.1 (Agilent). ..

    Article Title: Chemosensitivity prediction in esophageal squamous cell carcinoma: Novel marker genes and efficacy-prediction formulae using their expression data
    Article Snippet: Ten-micrograms of cRNA was then fragmented and hybridized to a CodelinkTM Uniset Human 20K I Bioarray containing 19,981 probes with positive and negative bacterial control probes. .. After hybridization, the arrays were rinsed and labeled with Streptavidin-Cy5, scanned using Agilent DNA Microarray Scanner (Agilent), and then analyzed with Codelink Expression Analysis Software. ..

    Software:

    Article Title: Transcriptional Profiling of Human Familial Longevity Indicates a Role for ASF1A and IL7R
    Article Snippet: The 150 samples that met the RNA quality criteria were hybridized onto 54k CodeLink Human Whole Genome Bioarrays (GE Healthcare, Bucks, UK, cat. No. 300026, currently of Applied Microarrays). cDNA synthesis, amplification, biotin labeling and hybridization onto the microarrays were performed according to the manufacturer's instructions using the Codelink iExpress reagent kit (cat. No. 67601000). .. The slides were scanned with a MicroArray Scanner G2505B scanner (Agilent Technologies, South Queensferry, UK) and the image was quantified with the CodeLink Expression software (version 4.2). ..

    Article Title: Microarray analysis in B cells among siblings with/without MS - role for transcription factor TCF2
    Article Snippet: The arrays were subsequently washed, stained with Cy5-Streptavidin (GE Amersham) and scanned on an Axon Genepix 4000B scanner. .. The data were collected using Codelink Expression Analysis software and analyzed using Genespring software version 7.3.1 (Agilent). ..

    Article Title: Chemosensitivity prediction in esophageal squamous cell carcinoma: Novel marker genes and efficacy-prediction formulae using their expression data
    Article Snippet: Ten-micrograms of cRNA was then fragmented and hybridized to a CodelinkTM Uniset Human 20K I Bioarray containing 19,981 probes with positive and negative bacterial control probes. .. After hybridization, the arrays were rinsed and labeled with Streptavidin-Cy5, scanned using Agilent DNA Microarray Scanner (Agilent), and then analyzed with Codelink Expression Analysis Software. ..

    Article Title: Loss of GLIS2 causes nephronophthisis in humans and mice by increased apoptosis and fibrosis.
    Article Snippet: Nephronophthisis (NPHP), an autosomal recessive kidney disease, is the most frequent genetic cause of end-stage renal failure in the first three decades of life.. Positional cloning of the six known NPHP genes1–4 has linked its pathogenesis to primary cilia function3,5.. Here we identify mutation of GLIS2 as causing an NPHP-like phenotype in humans and mice, using positional cloning and mouse transgenics, respectively.

    Hybridization:

    Article Title: Chemosensitivity prediction in esophageal squamous cell carcinoma: Novel marker genes and efficacy-prediction formulae using their expression data
    Article Snippet: Ten-micrograms of cRNA was then fragmented and hybridized to a CodelinkTM Uniset Human 20K I Bioarray containing 19,981 probes with positive and negative bacterial control probes. .. After hybridization, the arrays were rinsed and labeled with Streptavidin-Cy5, scanned using Agilent DNA Microarray Scanner (Agilent), and then analyzed with Codelink Expression Analysis Software. ..

    Labeling:

    Article Title: Chemosensitivity prediction in esophageal squamous cell carcinoma: Novel marker genes and efficacy-prediction formulae using their expression data
    Article Snippet: Ten-micrograms of cRNA was then fragmented and hybridized to a CodelinkTM Uniset Human 20K I Bioarray containing 19,981 probes with positive and negative bacterial control probes. .. After hybridization, the arrays were rinsed and labeled with Streptavidin-Cy5, scanned using Agilent DNA Microarray Scanner (Agilent), and then analyzed with Codelink Expression Analysis Software. ..



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    Transcriptional profiling of KIR2D− and KIR2D+ CD8+ T cells. ( A ) Differential gene expression profile <t>(CodeLink</t> Genome Array) of KIR− (column 1), KIR2DL1/S1+ (column 2), and KIR2DL2/L3/S2+ (column 3) CD8+ T cell subsets. The figure shows the top 40 most significantly modulated genes (designed with http://www.ehbio.com/ImageGP/ ). ( B ) Total number of up- and down-regulated genes in each KIR2D+ CD8+ T cell subset (analysis performed with jvenn software). ( C ) Microarray results were confirmed with real time quantitative RT-PCR (qPCR) analysis. Expression ratio (upper plot) and relative fold changes (lower plot) are shown for microarray and qPCR assays, respectively. Differential gene expression was considered significant with p < 0.05 in three independent cells preparations. Mean fold-changes in gene transcript expression levels between KIR2D− and KIR2D+ were evaluated with 2 ΔΔCt . ( D ) Shows the normalized intensity of important molecules in the cytotoxic T cell biology and interleukin or interleukin receptors.
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    Transcriptional profiling of KIR2D− and KIR2D+ CD8+ T cells. ( A ) Differential gene expression profile <t>(CodeLink</t> Genome Array) of KIR− (column 1), KIR2DL1/S1+ (column 2), and KIR2DL2/L3/S2+ (column 3) CD8+ T cell subsets. The figure shows the top 40 most significantly modulated genes (designed with http://www.ehbio.com/ImageGP/ ). ( B ) Total number of up- and down-regulated genes in each KIR2D+ CD8+ T cell subset (analysis performed with jvenn software). ( C ) Microarray results were confirmed with real time quantitative RT-PCR (qPCR) analysis. Expression ratio (upper plot) and relative fold changes (lower plot) are shown for microarray and qPCR assays, respectively. Differential gene expression was considered significant with p < 0.05 in three independent cells preparations. Mean fold-changes in gene transcript expression levels between KIR2D− and KIR2D+ were evaluated with 2 ΔΔCt . ( D ) Shows the normalized intensity of important molecules in the cytotoxic T cell biology and interleukin or interleukin receptors.
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    Image Search Results


    Transcriptional profiling of KIR2D− and KIR2D+ CD8+ T cells. ( A ) Differential gene expression profile (CodeLink Genome Array) of KIR− (column 1), KIR2DL1/S1+ (column 2), and KIR2DL2/L3/S2+ (column 3) CD8+ T cell subsets. The figure shows the top 40 most significantly modulated genes (designed with http://www.ehbio.com/ImageGP/ ). ( B ) Total number of up- and down-regulated genes in each KIR2D+ CD8+ T cell subset (analysis performed with jvenn software). ( C ) Microarray results were confirmed with real time quantitative RT-PCR (qPCR) analysis. Expression ratio (upper plot) and relative fold changes (lower plot) are shown for microarray and qPCR assays, respectively. Differential gene expression was considered significant with p < 0.05 in three independent cells preparations. Mean fold-changes in gene transcript expression levels between KIR2D− and KIR2D+ were evaluated with 2 ΔΔCt . ( D ) Shows the normalized intensity of important molecules in the cytotoxic T cell biology and interleukin or interleukin receptors.

    Journal: Cancers

    Article Title: KIR+ CD8+ T Lymphocytes in Cancer Immunosurveillance and Patient Survival: Gene Expression Profiling

    doi: 10.3390/cancers12102991

    Figure Lengend Snippet: Transcriptional profiling of KIR2D− and KIR2D+ CD8+ T cells. ( A ) Differential gene expression profile (CodeLink Genome Array) of KIR− (column 1), KIR2DL1/S1+ (column 2), and KIR2DL2/L3/S2+ (column 3) CD8+ T cell subsets. The figure shows the top 40 most significantly modulated genes (designed with http://www.ehbio.com/ImageGP/ ). ( B ) Total number of up- and down-regulated genes in each KIR2D+ CD8+ T cell subset (analysis performed with jvenn software). ( C ) Microarray results were confirmed with real time quantitative RT-PCR (qPCR) analysis. Expression ratio (upper plot) and relative fold changes (lower plot) are shown for microarray and qPCR assays, respectively. Differential gene expression was considered significant with p < 0.05 in three independent cells preparations. Mean fold-changes in gene transcript expression levels between KIR2D− and KIR2D+ were evaluated with 2 ΔΔCt . ( D ) Shows the normalized intensity of important molecules in the cytotoxic T cell biology and interleukin or interleukin receptors.

    Article Snippet: Normalized data from the CodeLink software package were analyzed and only the genes that passed the CodeLink Bioarray quality controls were selected.

    Techniques: Gene Expression, Software, Microarray, Quantitative RT-PCR, Expressing