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cell spatial transcriptomic profiling  (Spatial Transcriptomics Inc)

 
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    Spatial Transcriptomics Inc cell spatial transcriptomic profiling
    Cell Spatial Transcriptomic Profiling, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cell+spatial+transcriptomic+profiling/profiling+transcriptomic/pm40938748-4-2-16
    Average 86 stars, based on 1 article reviews
    cell spatial transcriptomic profiling - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Staining:

    Article Title: PCK1 and ALDH1A1 are identified as biomarkers for inherent drug resistance in hepatocellular carcinoma
    Article Snippet: .. Fig. 3 Spatial transcriptomic profiling of P131-1 and P131-2. ( A ) Spatial transcriptomic analysis identified 15 subclusters across P131-1 and P131-2. ( B ) CopyKAT predicted malignant cells were mainly located in clusters 5, 8, 9, and 11. ( C ) H&E staining was performed on tumor tissue sections used for spatial transcriptomics. ( D ) Pathological annotation divided the samples into mesenchyme, tumor, liver, and juncture regions, which aligned with the subcluster distribution. ( E ) Tumor spots were further classified into 9 clusters. ( F ) These tumor subclusters reflected both shared and sample-specific features of P131-1 and P131-2. ( G ) Distribution of tumor spots from P131-1 and P131-2 across the 9 tumor subclusters Within the tumor regions, we further subdivided them into four subpopulations, namely clusters 5, 8, 9, and 11, and subsequently performed dimensionality reduction and clustering, resulting in the identification of nine subpopulations (Fig. E). ..

    Spatial Transcriptomics:

    Article Title: PCK1 and ALDH1A1 are identified as biomarkers for inherent drug resistance in hepatocellular carcinoma
    Article Snippet: .. Fig. 3 Spatial transcriptomic profiling of P131-1 and P131-2. ( A ) Spatial transcriptomic analysis identified 15 subclusters across P131-1 and P131-2. ( B ) CopyKAT predicted malignant cells were mainly located in clusters 5, 8, 9, and 11. ( C ) H&E staining was performed on tumor tissue sections used for spatial transcriptomics. ( D ) Pathological annotation divided the samples into mesenchyme, tumor, liver, and juncture regions, which aligned with the subcluster distribution. ( E ) Tumor spots were further classified into 9 clusters. ( F ) These tumor subclusters reflected both shared and sample-specific features of P131-1 and P131-2. ( G ) Distribution of tumor spots from P131-1 and P131-2 across the 9 tumor subclusters Within the tumor regions, we further subdivided them into four subpopulations, namely clusters 5, 8, 9, and 11, and subsequently performed dimensionality reduction and clustering, resulting in the identification of nine subpopulations (Fig. E). ..

    Article Title: Novel insights into meningioma brain invasion with spatial transcriptomic profiling.
    Article Snippet: .. AR TIC LE IN PR ES S Novel insights into meningioma brain invasion with spatial transcriptomic profiling Running title: Spatial Transcriptomics of Brain Invasion in Meningioma Authors: Andrea Daniela Maier1,2*, Claes Ottzen Laurentiussen3,5, Signe Regner Michaelsen3, Lorenzo Perino4, Tobias Overlund Stannius4, Dylan Scott Lykke Harwood3,5, Marc Nihøj Klausen3,5, Jeppe HaslundVinding1, Nicolai Schou Bager3,4,5, David Scheie2, Ane Yde Schmidt4, Linea Cecilie Melchior2, Aušrinė Areškevičiūtė 2,6, Frederik Vilhardt7, Knud Elnegaard Josefsen3, David R. Raleigh8, Frederik Otzen Bagger4, Tiit Mathiesen1,9,10†, Bjarne Winther Kristensen3,5†. ..

    Article Title: Protocol for single-cell spatial transcriptomic profiling of cultured cells and engineered tissues without embedding or sectioning.
    Article Snippet: .. Protocol for single-cell spatial transcriptomic profiling of cultured cells and engineered tissues without embedding or sectioning Spatial transcriptomics is a powerful tool for investigating how cellular composition and spatial relationships influence cell behavior. ..

    Article Title: Current knowledge on the host-pathogen interactions of henipaviruses and novel platforms to enable further characterisation
    Article Snippet: .. Following fixation to inactivate the pathogen, organoids can be analysed histologically, through using immunofluorescence microscopy, or subjected to transcriptomic profiling (including single-cell workflows or spatial transcriptomics). ..

    Single Cell:

    Article Title: Protocol for single-cell spatial transcriptomic profiling of cultured cells and engineered tissues without embedding or sectioning.
    Article Snippet: .. Protocol for single-cell spatial transcriptomic profiling of cultured cells and engineered tissues without embedding or sectioning Spatial transcriptomics is a powerful tool for investigating how cellular composition and spatial relationships influence cell behavior. ..

    Article Title: Current knowledge on the host-pathogen interactions of henipaviruses and novel platforms to enable further characterisation
    Article Snippet: .. Following fixation to inactivate the pathogen, organoids can be analysed histologically, through using immunofluorescence microscopy, or subjected to transcriptomic profiling (including single-cell workflows or spatial transcriptomics). ..

    Cell Culture:

    Article Title: Protocol for single-cell spatial transcriptomic profiling of cultured cells and engineered tissues without embedding or sectioning.
    Article Snippet: .. Protocol for single-cell spatial transcriptomic profiling of cultured cells and engineered tissues without embedding or sectioning Spatial transcriptomics is a powerful tool for investigating how cellular composition and spatial relationships influence cell behavior. ..

    Immunofluorescence:

    Article Title: Current knowledge on the host-pathogen interactions of henipaviruses and novel platforms to enable further characterisation
    Article Snippet: .. Following fixation to inactivate the pathogen, organoids can be analysed histologically, through using immunofluorescence microscopy, or subjected to transcriptomic profiling (including single-cell workflows or spatial transcriptomics). ..

    Microscopy:

    Article Title: Current knowledge on the host-pathogen interactions of henipaviruses and novel platforms to enable further characterisation
    Article Snippet: .. Following fixation to inactivate the pathogen, organoids can be analysed histologically, through using immunofluorescence microscopy, or subjected to transcriptomic profiling (including single-cell workflows or spatial transcriptomics). ..



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    Comparisons of different single-cell transcriptomic techniques.
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    Image Search Results


    Comparisons of different single-cell transcriptomic techniques.

    Journal: Frontiers in Neural Circuits

    Article Title: Recent advances in understanding neuronal diversity and neural circuit complexity across different brain regions using single-cell sequencing

    doi: 10.3389/fncir.2023.1007755

    Figure Lengend Snippet: Comparisons of different single-cell transcriptomic techniques.

    Article Snippet: Single-cell transcriptome profiling technology (spatial transcriptomics) , Single cell level , MERFISH , Currently up to 500 selected genes , All cell types , Fresh frozen, PFA-fixed frozen tissue, paraffin-embedded tissue.

    Techniques: RNA Sequencing, Formalin-fixed Paraffin-Embedded

    Neuronal diversity across different brain regions revealed by single-cell transcriptomic studies. Most recent literature about neuronal transcriptomes have investigated neuron subpopulations from prefrontal cortex, hippocampus, and hypothalamus. Relevant details have been also described in . IT, intratelencephalic-projecting neurons; ET, extratelencephalic-projecting neurons; NP, near-projecting neurons; CT, corticothalamic projecting neurons.

    Journal: Frontiers in Neural Circuits

    Article Title: Recent advances in understanding neuronal diversity and neural circuit complexity across different brain regions using single-cell sequencing

    doi: 10.3389/fncir.2023.1007755

    Figure Lengend Snippet: Neuronal diversity across different brain regions revealed by single-cell transcriptomic studies. Most recent literature about neuronal transcriptomes have investigated neuron subpopulations from prefrontal cortex, hippocampus, and hypothalamus. Relevant details have been also described in . IT, intratelencephalic-projecting neurons; ET, extratelencephalic-projecting neurons; NP, near-projecting neurons; CT, corticothalamic projecting neurons.

    Article Snippet: Single-cell transcriptome profiling technology (spatial transcriptomics) , Single cell level , MERFISH , Currently up to 500 selected genes , All cell types , Fresh frozen, PFA-fixed frozen tissue, paraffin-embedded tissue.

    Techniques: