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bootscan analyses  (Simplot Science)

 
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    Simplot Science bootscan analyses
    Similarity plot and <t>bootscan</t> analyses of the CVA4 strains in this study with the reference strains. Similarity plot and bootscan profiles were indistinguishable among isolates YT13, LY10, LY25, LY32 and LY36; therefore, only the representative plots for LY10 are shown.
    Bootscan Analyses, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bootscan+in+simplot+software/analyses+bootscan/pmc12953577-94-13-19
    Average 86 stars, based on 1 article reviews
    bootscan analyses - by Bioz Stars, 2026-10
    86/100 stars

    Images

    1) Product Images from "Whole-genome analysis of CVA4 in children with herpangina in two cities of Shandong, China"

    Article Title: Whole-genome analysis of CVA4 in children with herpangina in two cities of Shandong, China

    Journal: Scientific Reports

    doi: 10.1038/s41598-026-39455-x

    Similarity plot and bootscan analyses of the CVA4 strains in this study with the reference strains. Similarity plot and bootscan profiles were indistinguishable among isolates YT13, LY10, LY25, LY32 and LY36; therefore, only the representative plots for LY10 are shown.
    Figure Legend Snippet: Similarity plot and bootscan analyses of the CVA4 strains in this study with the reference strains. Similarity plot and bootscan profiles were indistinguishable among isolates YT13, LY10, LY25, LY32 and LY36; therefore, only the representative plots for LY10 are shown.

    Techniques Used:

    Related Articles

    other:

    Article Title: Whole-genome analysis of CVA4 in children with herpangina in two cities of Shandong, China
    Article Snippet: To validate these events and precisely map the recombination breakpoints, similarity plot and bootscan analyses were subsequently performed using Simplot (v3.5.1) (Fig. ).



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    <t>The</t> <t>phylogenetic</t> inferences were performed by the Neighbor-Joining algorithm under the Kimura-2 parameter nucleotide substitution model using the MEGA v5.0 package. The scale represents the number of substitutions per site. Cape Verde and reference sequences are represented, respectively as black and white circles. Bootscan analyses of HIV-1 major URF samples are displayed. Recombinant profiles were inferred using a sliding window of 200 bp, steps of 20 bp and the Kimura-2 parameters model using SimPlot <t>3.5.1</t> software. Reference samples corresponding to the major HIV-1 subtypes are indicated by different colors.
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    Image Search Results


    The phylogenetic inferences were performed by the Neighbor-Joining algorithm under the Kimura-2 parameter nucleotide substitution model using the MEGA v5.0 package. The scale represents the number of substitutions per site. Cape Verde and reference sequences are represented, respectively as black and white circles. Bootscan analyses of HIV-1 major URF samples are displayed. Recombinant profiles were inferred using a sliding window of 200 bp, steps of 20 bp and the Kimura-2 parameters model using SimPlot 3.5.1 software. Reference samples corresponding to the major HIV-1 subtypes are indicated by different colors.

    Journal: PLoS ONE

    Article Title: Profile of the HIV Epidemic in Cape Verde: Molecular Epidemiology and Drug Resistance Mutations among HIV-1 and HIV-2 Infected Patients from Distinct Islands of the Archipelago

    doi: 10.1371/journal.pone.0096201

    Figure Lengend Snippet: The phylogenetic inferences were performed by the Neighbor-Joining algorithm under the Kimura-2 parameter nucleotide substitution model using the MEGA v5.0 package. The scale represents the number of substitutions per site. Cape Verde and reference sequences are represented, respectively as black and white circles. Bootscan analyses of HIV-1 major URF samples are displayed. Recombinant profiles were inferred using a sliding window of 200 bp, steps of 20 bp and the Kimura-2 parameters model using SimPlot 3.5.1 software. Reference samples corresponding to the major HIV-1 subtypes are indicated by different colors.

    Article Snippet: Subtype determination was performed by: 1) the REGA program , ; 2) Neighbor-Joining (NJ) phylogenetic analyses using MEGA program , and 3) Bootscan analyses with Simplot 3.5.1 software .

    Techniques: Recombinant, Software

    (A) The phylogenetic inferences were performed by the Neighbor-Joining algorithm under the Kimura-2 parameter nucleotide substitution model using the MEGA v5.0 package. The scale represents the number of substitutions per site. Cape Verde and reference sequences are represented respectively as colored and white circles. (B) Recombinant profiles were inferred using a sliding window of 200 bp, steps of 20 bp and the Kimura-2 parameters model using SimPlot 3.5.1 software. Reference samples corresponding to the major HIV-1 subtypes are indicated by different colors. Partial NJ phylogenetic trees using K-2p model were performed for bootscan fragments under 70% and were represented as I - 150 bp and II and III - 300 bp.

    Journal: PLoS ONE

    Article Title: Profile of the HIV Epidemic in Cape Verde: Molecular Epidemiology and Drug Resistance Mutations among HIV-1 and HIV-2 Infected Patients from Distinct Islands of the Archipelago

    doi: 10.1371/journal.pone.0096201

    Figure Lengend Snippet: (A) The phylogenetic inferences were performed by the Neighbor-Joining algorithm under the Kimura-2 parameter nucleotide substitution model using the MEGA v5.0 package. The scale represents the number of substitutions per site. Cape Verde and reference sequences are represented respectively as colored and white circles. (B) Recombinant profiles were inferred using a sliding window of 200 bp, steps of 20 bp and the Kimura-2 parameters model using SimPlot 3.5.1 software. Reference samples corresponding to the major HIV-1 subtypes are indicated by different colors. Partial NJ phylogenetic trees using K-2p model were performed for bootscan fragments under 70% and were represented as I - 150 bp and II and III - 300 bp.

    Article Snippet: Subtype determination was performed by: 1) the REGA program , ; 2) Neighbor-Joining (NJ) phylogenetic analyses using MEGA program , and 3) Bootscan analyses with Simplot 3.5.1 software .

    Techniques: Recombinant, Software