Review

simplot software version 3 5 1 (Simplot Science)

About

News

Press Release

Team

Advisors

Partners

Contact

Bioz Stars

Bioz vStars

Buy from Supplier

Structured Review

Simplot Science simplot software version 3 5 1
Simplot Software Version 3 5 1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bootscan+analysis+of+simplot+software/1+3+5+simplot+version/pmc12543499-93-11-11
Average 86 stars, based on 1 article reviews

simplot software version 3 5 1 - by Bioz Stars, 2026-09

86/100 stars

Images

other:

Article Title: Divergent tissue tropism and pathogenicity of novel recombinant GI-19 and GI-22 infectious bronchitis virus strains
Article Snippet: To further validate the putative recombination signals, similarity plot analysis was performed using SimPlot version 3.5.1 with a window size of 200 bp, a step size of 20 bp, and a transition-to-transversion ratio of 2.0.

Article Title: Novel genotyping and genetic heterogeneity of chicken parvovirus in central and Eastern China
Article Snippet: Recombination prediction for the new CKPV strains was performed with the Recombination Detection Program (RDP) version 4.8.3 and SimPlot version 3.5.1.

Article Title: Novel Taiwan-I-type infectious bronchitis virus: First evidence of testicular atrophy and efficacious protection with strain-matched oil-emulsified inactivated vaccine
Article Snippet: Results were further confirmed using SimPlot version 3.5.1 with a window size of 200 nucleotides, step size of 20 nucleotides, Kimura 2-parameter model, and 1000 bootstrap replicates.

Article Title: Divergent Tissue Tropism and Pathogenicity of Novel Recombinant GI-19 and GI-22 Infectious Bronchitis Virus Strains
Article Snippet: To further validate the putative recombination signals, similarity plot analysis was performed using SimPlot version 3.5.1 with a window size of 200 bp, a step size of 20 bp, and a transition-to-transversion ratio of 2.0.

Article Title: Vaccine‐Associated Recombination and Virulence Heterogeneity of GI‐19 (QX Type) Infectious Bronchitis Virus in Eastern and Southern China, 2024−2025
Article Snippet: Potential recombination events were further verified by similarity plot analysis using SimPlot version 3.5.1 [ ].

Software:

Article Title: Molecular characterization and pathogenicity of a HP-like PRRSV strain and a NADC30 recombinant strain.
Article Snippet: 25 Porcine Reproductive and Respiratory Syndrome Virus Type 2 (PRRSV-2) remains 26 widespread in China and continues to persist as an important pathogen affecting the swine 27 industry.. In recent years, NADC30-like strains and their recombinants have become dominant, 28 while HP-PRRSV strains are mostly sporadic, resulting in ongoing outbreaks and considerable 29 economic losses.. This study successfully isolated two PRRSV-2 strains from Hunan and 30 Shandong, and assessed their pathogenicity in swine.

Recombinant:

Article Title: Detection of Circulating HBV QSA3/E Recombinants and HDV Genotype GT5 amongst blood donors in Senegal.
Article Snippet: .. Recombinant Analysis Sequences that branched basal to the reference sequences underwent recombination analysis utilizing Simplot version 3.5.1 (https://sray.med.som.jhmi.edu/SCRoftware/SimPlot/) for similarity plot and bootscanning analyses, and breakpoints were estimated. .. Predicted breakpoints were further validated by rerunning maximum likelihood trees on the individual genome fragments identified by Simplot.