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virus encoding cas9  (Addgene inc)


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    Structured Review

    Addgene inc virus encoding cas9
    KEY RESOURCES TABLE
    Virus Encoding Cas9, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 1665 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/blastx+function/lentiCas9-Blast+(Plasmid+%2352962)/pmc07197326-857-22-25
    Average 96 stars, based on 1665 article reviews
    virus encoding cas9 - by Bioz Stars, 2026-10
    96/100 stars

    Images

    1) Product Images from "Vitamin B6 addiction in acute myeloid leukemia"

    Article Title: Vitamin B6 addiction in acute myeloid leukemia

    Journal: Cancer cell

    doi: 10.1016/j.ccell.2019.12.002

    KEY RESOURCES TABLE
    Figure Legend Snippet: KEY RESOURCES TABLE

    Techniques Used: Plasmid Preparation, Recombinant, Mutagenesis, RNA Extraction, Gel Extraction, Clone Assay, Purification, Flow Cytometry, Sequencing, CRISPR, Functional Assay, shRNA, Software

    Related Articles

    Recombinant:

    Article Title: SPARCS enables scalable recovery of complex image-based phenotypes for genetic screening.
    Article Snippet: Human female U2OS and HeLa cells were cultured in DMEM (Thermo Fisher Scientific #41965062) supplemented with 10 % fetal calf serum (FCS) (gibco #10270-106), penicillin/streptomycin (Thermo Fisher Scientific #15-140-122) and 1 mM sodium pyruvate (Thermo .. REAGENT or RESOURCE SOURCE IDENTIFIER GPR89B_crRNA_2 rUrCrArCrUrCrCrArArUrCrArCrArCrCrArAr CrCrGrUrUrUrUrArGrArGrCrUrArUrGrCrU Integrated DNA Technologies n/a Recombinant DNA Genome-wide human Brunello CRISPR library (LentiGUIDE-Puro) Doench et al.57 Addgene-73178 Genome-wide human Brunello CRISPR library (LentiCRISPRv2) Doench et al.57 Addgene-73179 pFUGW-mCherry-hsLC3 This study, Jahreiss et al.103 Addgene-40827 pFUGW-LckLip-mNeon This study, Chertkova et al.104 Addgene-98821 pLenti6-MGAT-SEP-mRuby3 This study, Liu et al.75 Addgene-200937 pLenti6-GALT-SEP-mRuby3 This study, Liu et al.75 Addgene-200938 pBlast_hsGPR89B_FLAG This study n/a pFUGW_hsSTING1_mNeon This study n/a Lenti-Cas9-Blast Sanjana et al.105 Addgene-52962 Software and algorithms py-lmd This study https://github.com/MannLabs/py-lmd SPARCSpy This study https://github.com/MannLabs/SPARCSpy SPARCStools This study https://github.com/MannLabs/SPARCStools ASHLAR Muhlich et al.106 https://github.com/labsyspharm/ashlar Napari Sofroniew et al.107 https://napari.org/stable/ FIJI Schindelin et al.108 https://fiji.sc/ Prism 9.0 GraphPad, San Diego, CA https://www.graphpad.com/ scientific-software/prism/ DIA-NN 2.2.0 Demichev et al.109 https://github.com/vdemichev/diann scPortrait Mädler et al.110 https://github.com/MannLabs/scPortrait Scanpy Wolf et al.111 https://scanpy.scverse.org/en/stable/ AlphaPeptTools n/a https://github.com/MannLabs/alphapepttools Other PPS metal frame slides MicroDissect MDE5P80WK Aurora Rapid column (5cm × 75μm, C18, 1.7μm particle size) IonOpticks AUR4-5075C18-CSI 384 well Protein LoBind plates Eppendorf 0030624300 48-well plates (LMD sample collection) Sarstedt 38.3923.500 Evotip Pure Evosep EV2018 Non-tissue culture treated 6-well plates VWR 734-2777 ll OPEN ACCESS Cell 189, 1–17.e1–e10, December 24, 2026 e4 Resource Fisher Scientific # 11360039) and split every 2–3 days. ..

    Genome Wide:

    Article Title: SPARCS enables scalable recovery of complex image-based phenotypes for genetic screening.
    Article Snippet: Human female U2OS and HeLa cells were cultured in DMEM (Thermo Fisher Scientific #41965062) supplemented with 10 % fetal calf serum (FCS) (gibco #10270-106), penicillin/streptomycin (Thermo Fisher Scientific #15-140-122) and 1 mM sodium pyruvate (Thermo .. REAGENT or RESOURCE SOURCE IDENTIFIER GPR89B_crRNA_2 rUrCrArCrUrCrCrArArUrCrArCrArCrCrArAr CrCrGrUrUrUrUrArGrArGrCrUrArUrGrCrU Integrated DNA Technologies n/a Recombinant DNA Genome-wide human Brunello CRISPR library (LentiGUIDE-Puro) Doench et al.57 Addgene-73178 Genome-wide human Brunello CRISPR library (LentiCRISPRv2) Doench et al.57 Addgene-73179 pFUGW-mCherry-hsLC3 This study, Jahreiss et al.103 Addgene-40827 pFUGW-LckLip-mNeon This study, Chertkova et al.104 Addgene-98821 pLenti6-MGAT-SEP-mRuby3 This study, Liu et al.75 Addgene-200937 pLenti6-GALT-SEP-mRuby3 This study, Liu et al.75 Addgene-200938 pBlast_hsGPR89B_FLAG This study n/a pFUGW_hsSTING1_mNeon This study n/a Lenti-Cas9-Blast Sanjana et al.105 Addgene-52962 Software and algorithms py-lmd This study https://github.com/MannLabs/py-lmd SPARCSpy This study https://github.com/MannLabs/SPARCSpy SPARCStools This study https://github.com/MannLabs/SPARCStools ASHLAR Muhlich et al.106 https://github.com/labsyspharm/ashlar Napari Sofroniew et al.107 https://napari.org/stable/ FIJI Schindelin et al.108 https://fiji.sc/ Prism 9.0 GraphPad, San Diego, CA https://www.graphpad.com/ scientific-software/prism/ DIA-NN 2.2.0 Demichev et al.109 https://github.com/vdemichev/diann scPortrait Mädler et al.110 https://github.com/MannLabs/scPortrait Scanpy Wolf et al.111 https://scanpy.scverse.org/en/stable/ AlphaPeptTools n/a https://github.com/MannLabs/alphapepttools Other PPS metal frame slides MicroDissect MDE5P80WK Aurora Rapid column (5cm × 75μm, C18, 1.7μm particle size) IonOpticks AUR4-5075C18-CSI 384 well Protein LoBind plates Eppendorf 0030624300 48-well plates (LMD sample collection) Sarstedt 38.3923.500 Evotip Pure Evosep EV2018 Non-tissue culture treated 6-well plates VWR 734-2777 ll OPEN ACCESS Cell 189, 1–17.e1–e10, December 24, 2026 e4 Resource Fisher Scientific # 11360039) and split every 2–3 days. ..

    CRISPR:

    Article Title: SPARCS enables scalable recovery of complex image-based phenotypes for genetic screening.
    Article Snippet: Human female U2OS and HeLa cells were cultured in DMEM (Thermo Fisher Scientific #41965062) supplemented with 10 % fetal calf serum (FCS) (gibco #10270-106), penicillin/streptomycin (Thermo Fisher Scientific #15-140-122) and 1 mM sodium pyruvate (Thermo .. REAGENT or RESOURCE SOURCE IDENTIFIER GPR89B_crRNA_2 rUrCrArCrUrCrCrArArUrCrArCrArCrCrArAr CrCrGrUrUrUrUrArGrArGrCrUrArUrGrCrU Integrated DNA Technologies n/a Recombinant DNA Genome-wide human Brunello CRISPR library (LentiGUIDE-Puro) Doench et al.57 Addgene-73178 Genome-wide human Brunello CRISPR library (LentiCRISPRv2) Doench et al.57 Addgene-73179 pFUGW-mCherry-hsLC3 This study, Jahreiss et al.103 Addgene-40827 pFUGW-LckLip-mNeon This study, Chertkova et al.104 Addgene-98821 pLenti6-MGAT-SEP-mRuby3 This study, Liu et al.75 Addgene-200937 pLenti6-GALT-SEP-mRuby3 This study, Liu et al.75 Addgene-200938 pBlast_hsGPR89B_FLAG This study n/a pFUGW_hsSTING1_mNeon This study n/a Lenti-Cas9-Blast Sanjana et al.105 Addgene-52962 Software and algorithms py-lmd This study https://github.com/MannLabs/py-lmd SPARCSpy This study https://github.com/MannLabs/SPARCSpy SPARCStools This study https://github.com/MannLabs/SPARCStools ASHLAR Muhlich et al.106 https://github.com/labsyspharm/ashlar Napari Sofroniew et al.107 https://napari.org/stable/ FIJI Schindelin et al.108 https://fiji.sc/ Prism 9.0 GraphPad, San Diego, CA https://www.graphpad.com/ scientific-software/prism/ DIA-NN 2.2.0 Demichev et al.109 https://github.com/vdemichev/diann scPortrait Mädler et al.110 https://github.com/MannLabs/scPortrait Scanpy Wolf et al.111 https://scanpy.scverse.org/en/stable/ AlphaPeptTools n/a https://github.com/MannLabs/alphapepttools Other PPS metal frame slides MicroDissect MDE5P80WK Aurora Rapid column (5cm × 75μm, C18, 1.7μm particle size) IonOpticks AUR4-5075C18-CSI 384 well Protein LoBind plates Eppendorf 0030624300 48-well plates (LMD sample collection) Sarstedt 38.3923.500 Evotip Pure Evosep EV2018 Non-tissue culture treated 6-well plates VWR 734-2777 ll OPEN ACCESS Cell 189, 1–17.e1–e10, December 24, 2026 e4 Resource Fisher Scientific # 11360039) and split every 2–3 days. ..

    Article Title: FDXR upregulation by p63/p73 is a prognostic and therapeutic marker of adult T-cell leukemia/lymphoma.
    Article Snippet: .. Gene expression knockout with CRISPR/Cas9 HTLV-1 infected (MT-4) and ATL (ATL-55T) cell lines were transduced to stably express Cas9 using the lentiCas9-Blast lentivirus (Addgene 18 EMBO Molecular Medicine © The Author(s) #52962-LV) (Sanjana et al, 2014) atMOI 50. ..

    Data-independent acquisition:

    Article Title: SPARCS enables scalable recovery of complex image-based phenotypes for genetic screening.
    Article Snippet: Human female U2OS and HeLa cells were cultured in DMEM (Thermo Fisher Scientific #41965062) supplemented with 10 % fetal calf serum (FCS) (gibco #10270-106), penicillin/streptomycin (Thermo Fisher Scientific #15-140-122) and 1 mM sodium pyruvate (Thermo .. REAGENT or RESOURCE SOURCE IDENTIFIER GPR89B_crRNA_2 rUrCrArCrUrCrCrArArUrCrArCrArCrCrArAr CrCrGrUrUrUrUrArGrArGrCrUrArUrGrCrU Integrated DNA Technologies n/a Recombinant DNA Genome-wide human Brunello CRISPR library (LentiGUIDE-Puro) Doench et al.57 Addgene-73178 Genome-wide human Brunello CRISPR library (LentiCRISPRv2) Doench et al.57 Addgene-73179 pFUGW-mCherry-hsLC3 This study, Jahreiss et al.103 Addgene-40827 pFUGW-LckLip-mNeon This study, Chertkova et al.104 Addgene-98821 pLenti6-MGAT-SEP-mRuby3 This study, Liu et al.75 Addgene-200937 pLenti6-GALT-SEP-mRuby3 This study, Liu et al.75 Addgene-200938 pBlast_hsGPR89B_FLAG This study n/a pFUGW_hsSTING1_mNeon This study n/a Lenti-Cas9-Blast Sanjana et al.105 Addgene-52962 Software and algorithms py-lmd This study https://github.com/MannLabs/py-lmd SPARCSpy This study https://github.com/MannLabs/SPARCSpy SPARCStools This study https://github.com/MannLabs/SPARCStools ASHLAR Muhlich et al.106 https://github.com/labsyspharm/ashlar Napari Sofroniew et al.107 https://napari.org/stable/ FIJI Schindelin et al.108 https://fiji.sc/ Prism 9.0 GraphPad, San Diego, CA https://www.graphpad.com/ scientific-software/prism/ DIA-NN 2.2.0 Demichev et al.109 https://github.com/vdemichev/diann scPortrait Mädler et al.110 https://github.com/MannLabs/scPortrait Scanpy Wolf et al.111 https://scanpy.scverse.org/en/stable/ AlphaPeptTools n/a https://github.com/MannLabs/alphapepttools Other PPS metal frame slides MicroDissect MDE5P80WK Aurora Rapid column (5cm × 75μm, C18, 1.7μm particle size) IonOpticks AUR4-5075C18-CSI 384 well Protein LoBind plates Eppendorf 0030624300 48-well plates (LMD sample collection) Sarstedt 38.3923.500 Evotip Pure Evosep EV2018 Non-tissue culture treated 6-well plates VWR 734-2777 ll OPEN ACCESS Cell 189, 1–17.e1–e10, December 24, 2026 e4 Resource Fisher Scientific # 11360039) and split every 2–3 days. ..

    Laser Capture Microdissection:

    Article Title: SPARCS enables scalable recovery of complex image-based phenotypes for genetic screening.
    Article Snippet: Human female U2OS and HeLa cells were cultured in DMEM (Thermo Fisher Scientific #41965062) supplemented with 10 % fetal calf serum (FCS) (gibco #10270-106), penicillin/streptomycin (Thermo Fisher Scientific #15-140-122) and 1 mM sodium pyruvate (Thermo .. REAGENT or RESOURCE SOURCE IDENTIFIER GPR89B_crRNA_2 rUrCrArCrUrCrCrArArUrCrArCrArCrCrArAr CrCrGrUrUrUrUrArGrArGrCrUrArUrGrCrU Integrated DNA Technologies n/a Recombinant DNA Genome-wide human Brunello CRISPR library (LentiGUIDE-Puro) Doench et al.57 Addgene-73178 Genome-wide human Brunello CRISPR library (LentiCRISPRv2) Doench et al.57 Addgene-73179 pFUGW-mCherry-hsLC3 This study, Jahreiss et al.103 Addgene-40827 pFUGW-LckLip-mNeon This study, Chertkova et al.104 Addgene-98821 pLenti6-MGAT-SEP-mRuby3 This study, Liu et al.75 Addgene-200937 pLenti6-GALT-SEP-mRuby3 This study, Liu et al.75 Addgene-200938 pBlast_hsGPR89B_FLAG This study n/a pFUGW_hsSTING1_mNeon This study n/a Lenti-Cas9-Blast Sanjana et al.105 Addgene-52962 Software and algorithms py-lmd This study https://github.com/MannLabs/py-lmd SPARCSpy This study https://github.com/MannLabs/SPARCSpy SPARCStools This study https://github.com/MannLabs/SPARCStools ASHLAR Muhlich et al.106 https://github.com/labsyspharm/ashlar Napari Sofroniew et al.107 https://napari.org/stable/ FIJI Schindelin et al.108 https://fiji.sc/ Prism 9.0 GraphPad, San Diego, CA https://www.graphpad.com/ scientific-software/prism/ DIA-NN 2.2.0 Demichev et al.109 https://github.com/vdemichev/diann scPortrait Mädler et al.110 https://github.com/MannLabs/scPortrait Scanpy Wolf et al.111 https://scanpy.scverse.org/en/stable/ AlphaPeptTools n/a https://github.com/MannLabs/alphapepttools Other PPS metal frame slides MicroDissect MDE5P80WK Aurora Rapid column (5cm × 75μm, C18, 1.7μm particle size) IonOpticks AUR4-5075C18-CSI 384 well Protein LoBind plates Eppendorf 0030624300 48-well plates (LMD sample collection) Sarstedt 38.3923.500 Evotip Pure Evosep EV2018 Non-tissue culture treated 6-well plates VWR 734-2777 ll OPEN ACCESS Cell 189, 1–17.e1–e10, December 24, 2026 e4 Resource Fisher Scientific # 11360039) and split every 2–3 days. ..

    Amplification:

    Article Title: Prime editing reveals the resistance landscape of EGFR tyrosine kinase domain variants
    Article Snippet: All PCR amplifications were performed using Q5 High-Fidelity DNA Polymerase according to the manufacturer’s protocol. .. Fragment 1 was amplified from lentiCas9-Blast using primers 8 and 9, and fragment 2 was amplified from pT7-PE7 (Addgene, 214813) using primers 10 and 11. ..

    Knock-Out:

    Article Title: SLC25A28 is a synthetic lethal vulnerability in nucleotide excision repair-deficient cancers
    Article Snippet: .. RT112/84 wild-type and ERCC4 -knockout isogenic cell lines were first transduced with lentiCas9-Blast (Addgene, #52962) to generate stable cell populations with constitutive Cas9 expression. ..

    Article Title: FDXR upregulation by p63/p73 is a prognostic and therapeutic marker of adult T-cell leukemia/lymphoma.
    Article Snippet: .. Gene expression knockout with CRISPR/Cas9 HTLV-1 infected (MT-4) and ATL (ATL-55T) cell lines were transduced to stably express Cas9 using the lentiCas9-Blast lentivirus (Addgene 18 EMBO Molecular Medicine © The Author(s) #52962-LV) (Sanjana et al, 2014) atMOI 50. ..

    Transduction:

    Article Title: SLC25A28 is a synthetic lethal vulnerability in nucleotide excision repair-deficient cancers
    Article Snippet: .. RT112/84 wild-type and ERCC4 -knockout isogenic cell lines were first transduced with lentiCas9-Blast (Addgene, #52962) to generate stable cell populations with constitutive Cas9 expression. ..

    Stable Transfection:

    Article Title: SLC25A28 is a synthetic lethal vulnerability in nucleotide excision repair-deficient cancers
    Article Snippet: .. RT112/84 wild-type and ERCC4 -knockout isogenic cell lines were first transduced with lentiCas9-Blast (Addgene, #52962) to generate stable cell populations with constitutive Cas9 expression. ..

    Article Title: FDXR upregulation by p63/p73 is a prognostic and therapeutic marker of adult T-cell leukemia/lymphoma.
    Article Snippet: .. Gene expression knockout with CRISPR/Cas9 HTLV-1 infected (MT-4) and ATL (ATL-55T) cell lines were transduced to stably express Cas9 using the lentiCas9-Blast lentivirus (Addgene 18 EMBO Molecular Medicine © The Author(s) #52962-LV) (Sanjana et al, 2014) atMOI 50. ..

    Expressing:

    Article Title: SLC25A28 is a synthetic lethal vulnerability in nucleotide excision repair-deficient cancers
    Article Snippet: .. RT112/84 wild-type and ERCC4 -knockout isogenic cell lines were first transduced with lentiCas9-Blast (Addgene, #52962) to generate stable cell populations with constitutive Cas9 expression. ..

    Gene Expression:

    Article Title: FDXR upregulation by p63/p73 is a prognostic and therapeutic marker of adult T-cell leukemia/lymphoma.
    Article Snippet: .. Gene expression knockout with CRISPR/Cas9 HTLV-1 infected (MT-4) and ATL (ATL-55T) cell lines were transduced to stably express Cas9 using the lentiCas9-Blast lentivirus (Addgene 18 EMBO Molecular Medicine © The Author(s) #52962-LV) (Sanjana et al, 2014) atMOI 50. ..

    Infection:

    Article Title: FDXR upregulation by p63/p73 is a prognostic and therapeutic marker of adult T-cell leukemia/lymphoma.
    Article Snippet: .. Gene expression knockout with CRISPR/Cas9 HTLV-1 infected (MT-4) and ATL (ATL-55T) cell lines were transduced to stably express Cas9 using the lentiCas9-Blast lentivirus (Addgene 18 EMBO Molecular Medicine © The Author(s) #52962-LV) (Sanjana et al, 2014) atMOI 50. ..

    Transfection:

    Article Title: SMCHD1 is a target for gene activation therapy to treat Prader-Willi syndrome
    Article Snippet: Guide RNA (gRNAs) were cloned into lentiGuide-Puro (Addgene #52963) and pFgH1UTPuro (Addgene #70183 with the GFP reporter replaced by puromycin resistance). .. HEK293T cells at 80% confluency were transfected via calcium phosphate-mediated transfection with the psPAX packaging vector, the VSVg envelope vector, and a plasmid containing either a SMCHD1 gRNA or Cas9 (Addgene #52962) in the ratio of 2.5:1:1.5. ..

    Plasmid Preparation:

    Article Title: SMCHD1 is a target for gene activation therapy to treat Prader-Willi syndrome
    Article Snippet: Guide RNA (gRNAs) were cloned into lentiGuide-Puro (Addgene #52963) and pFgH1UTPuro (Addgene #70183 with the GFP reporter replaced by puromycin resistance). .. HEK293T cells at 80% confluency were transfected via calcium phosphate-mediated transfection with the psPAX packaging vector, the VSVg envelope vector, and a plasmid containing either a SMCHD1 gRNA or Cas9 (Addgene #52962) in the ratio of 2.5:1:1.5. ..

    other:

    Article Title: Functional identification of non-coding regulatory regions that drive breast and skin carcinogenesis.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Pooled sgRNA library – human nonFMRE control library (3,539 sgRNAs) GenScript (pooled chip synthesis) N/A Pooled NTC library (1,778 non-targeting control sgRNAs) Sanjana et al.81; Al-Zahrani et al.24 N/A Pooled dgRNA library – human FMRE CRISPR-A library GenScript (pooled chip synthesis) N/A Pooled sgRNA library – mouse mFMRE library (694 sgRNAs) GenScript (pooled chip synthesis) N/A Pooled sgRNA library – mouse nonFMRE control library (1,934 sgRNAs) GenScript (pooled chip synthesis) N/A Pooled NTC library for mouse (420 nontargeting control sgRNAs) This paper N/A Individual validation gRNAs (ZFP36L2, VMP1/miR21, TBC1D12, POLR3E, LNPEP, PTEN, TP53, AAVS1, TIGRE, UROD, B2M) This paper N/A RT-qPCR primers (PPIB, ZFP36L2, B2M, VMP1); sequences in Method Details This paper N/A Recombinant DNA pLKO-Cre lentiviral vector Loganathan et al.48; Loganathan et al.50 Addgene Plasmid # 158032; RRID: Addgene_158032 pLKO-H2B-mRFP-P2A-Puromycin Al-Zahrani et al.24 Addgene Plasmid #256775; RRID: Addgene_256775 pLKO-H2B-GFP-P2A-Puromycin This paper N/A psPAX2 Addgene Addgene Plasmid #12260; RRID: Addgene_12260 pMD2.G Addgene Addgene Plasmid #12259; RRID: Addgene_12259 pXPR502 PPH-puro v14 trcr filler Al-Zahrani et al.24 Addgene Plasmid #256777; RRID: Addgene_256777 miR21 overexpression construct Ge et al.53 N/A pLenti Cas9-blast Addgene Addgene Plasmid #52962; RRID: Addgene_52962 Software and algorithms ActiveDriverWGS v1.1.2 Zhu et al.5 https://github.com/reimandlab/ ActiveDriverWGS; RRID: SCR_027737 MAGeCK Li et al.82 https://sourceforge.net/projects/mageck/; RRID: SCR_025016 CRISPR-SURF Hsu et al.29 https://github.com/pinellolab/CRISPR- SURF sgTiler Ahmed et al.28 https://github.com/HansenHeLab/sgTiler ICE – Inference of CRISPR Edits Synthego https://ice.synthego.com/; RRID: SCR_024508 LiftOver Kuhn et al.83 https://genome.ucsc.edu/cgi-bin/ hgLiftOver; RRID: SCR_018160 TOMTOM Gupta et al.61 https://meme-suite.org/meme/tools/ tomtom; RRID: SCR_024809 GraphPad Prism 10 GraphPad Software https://www.graphpad.com; RRID: SCR_002798 R statistical computing environment R Core Team https://www.r-project.org; RRID: SCR_001905 Primer Express 3.0.1 Applied Biosystems Cat#4363993; RRID: SCR_017376 (Continued on next page) 20 Cell Reports 45, 118111, October 27, 2026



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