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Applied Maths program bionumerics 6.6
Program Bionumerics 6.6, supplied by Applied Maths, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bionumerics+program/bionumerics+software/pm38397659-237-7-10
Average 90 stars, based on 1 article reviews
program bionumerics 6.6 - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Retail wet markets, food handlers, and hospitalised patients as nodes in a shared non-typhoidal Salmonella ecosystem: a one health molecular epidemiological pilot study in Wuhan, China.
Article Snippet: Extended author information available on the last page of the article Abstract Background Non-typhoidal Salmonella (NTS) is a leading foodborne pathogen in China, yet the transmission dynamics linking retail wet markets, food handlers, and hospitalised patients remain poorly characterised.. Using a One Health framework, we investigated whether genotypically related Salmonella populations circulate across these three source categories in Wuhan.. Methods Thirty-two non-duplicate Salmonella isolates were recovered from retail meat at four wet markets (n = 9), anal swabs of food handlers (n = 7), and stool cultures of paediatric inpatients (n = 16) in Wuhan (June 2022–September 2023).

Article Title: Antimicrobial resistant bacteria in wastewater-irrigated Mexican soils and transfer of resistant bacteria from irrigated soils to cilantro plants
Article Snippet: Analysis was performed according to Bartz et al. using BioNumerics version 8 (Applied Maths, Belgium).

Construct:

Article Title: Genotypic diversity and zoonotic potential of Salmonella enterica from multiple hosts: implications for One Health.
Article Snippet: .. The allelic profiles obtained through MLST 152 were analyzed using BioNumerics v7.6 (Applied Maths, Sint-Martens-Latem, Belgium) to 153 construct a minimum spanning tree (MST). ..

Software:

Article Title: Serotypic and Genomic Diversity of Vibrio anguillarum in Rainbow Trout Farms in Turkey: Implications for Vibriosis Control and Vaccine Candidate Selection.
Article Snippet: Outbreaks of vibriosis caused by Vibrio anguillarum are a persistent constraint on rainbow trout (Oncorhynchus mykiss) aquaculture.. However, information on the population structure of field strains in Turkey has been lacking.. Here, we report the first systematic serotypic, proteomic, and genomic characterization of 23 V. anguillarum isolates collected over 10 years from rainbow trout farms located in six major aquaculture regions of Turkey.

Article Title: Cat-transmitted Sporotrichosis: A Clonal Household Outbreak with Atypical Human and Canine Disease Due to Sporothrix brasiliensis.
Article Snippet: The forward primers were labeled with fluorescent dyes (FAM, VIC, or NED), and fragment analysis was conducted via capillary electrophoresis on a SeqStudio Genetic Analyzer (Applied Biosystems, USA) with a LIZ600 internal size standard to ensure precise allele sizing. .. Allele calling and all subsequent bioinformatic analyses were conducted via BioNumerics software (version 7.6, Applied Maths, Belgium) [17, 22]. ..

Article Title: Containing a PER-1-producing Pseudomonas aeruginosa outbreak linked to sink contamination in an intensive care unit
Article Snippet: .. Banding patterns were normalised using BioNumerics software (Applied Maths, bioMérieux) and subsequently interpreted according to Tenover criteria, with profiles showing differences ≤3 bands considered indistinguishable or closely related [ ]. ..

Article Title: Cat-transmitted Sporotrichosis: A Clonal Household Outbreak with Atypical Human and Canine Disease Due to Sporothrix brasiliensis
Article Snippet: The forward primers were labeled with fluorescent dyes (FAM, VIC, or NED), and fragment analysis was conducted via capillary electrophoresis on a SeqStudio Genetic Analyzer (Applied Biosystems, USA) with a LIZ600 internal size standard to ensure precise allele sizing. .. Allele calling and all subsequent bioinformatic analyses were conducted via BioNumerics software (version 7.6, Applied Maths, Belgium) [ , ]. ..



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Dendrogram of six aEPEC presenting hybrid genotypes. Amplification profiles obtained in RAPD-PCR using primer 1247 (A) and primer 1283 (B) were evaluated by the <t>BioNumerics</t> and used to build the dendrogram. Note the proximity among strains 0811–4, 2071–1, 1482–11, and 2332–7. Strains 1551–3 and 3712–3 were less correlated. The red dashed line represents the cutoff of 90% similarity in the amplification pattern used to determine the clonality of the strains.
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Applied Maths program bionumerics 6.6
Dendrogram of six aEPEC presenting hybrid genotypes. Amplification profiles obtained in RAPD-PCR using primer 1247 (A) and primer 1283 (B) were evaluated by the <t>BioNumerics</t> and used to build the dendrogram. Note the proximity among strains 0811–4, 2071–1, 1482–11, and 2332–7. Strains 1551–3 and 3712–3 were less correlated. The red dashed line represents the cutoff of 90% similarity in the amplification pattern used to determine the clonality of the strains.
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Dendrogram of six aEPEC presenting hybrid genotypes. Amplification profiles obtained in RAPD-PCR using primer 1247 (A) and primer 1283 (B) were evaluated by the <t>BioNumerics</t> and used to build the dendrogram. Note the proximity among strains 0811–4, 2071–1, 1482–11, and 2332–7. Strains 1551–3 and 3712–3 were less correlated. The red dashed line represents the cutoff of 90% similarity in the amplification pattern used to determine the clonality of the strains.
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Dendrogram of six aEPEC presenting hybrid genotypes. Amplification profiles obtained in RAPD-PCR using primer 1247 (A) and primer 1283 (B) were evaluated by the <t>BioNumerics</t> and used to build the dendrogram. Note the proximity among strains 0811–4, 2071–1, 1482–11, and 2332–7. Strains 1551–3 and 3712–3 were less correlated. The red dashed line represents the cutoff of 90% similarity in the amplification pattern used to determine the clonality of the strains.
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Dendrogram of six aEPEC presenting hybrid genotypes. Amplification profiles obtained in RAPD-PCR using primer 1247 (A) and primer 1283 (B) were evaluated by the <t>BioNumerics</t> and used to build the dendrogram. Note the proximity among strains 0811–4, 2071–1, 1482–11, and 2332–7. Strains 1551–3 and 3712–3 were less correlated. The red dashed line represents the cutoff of 90% similarity in the amplification pattern used to determine the clonality of the strains.
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Applied Maths mlva plugin of the bionumerics program
Dendrogram of six aEPEC presenting hybrid genotypes. Amplification profiles obtained in RAPD-PCR using primer 1247 (A) and primer 1283 (B) were evaluated by the <t>BioNumerics</t> and used to build the dendrogram. Note the proximity among strains 0811–4, 2071–1, 1482–11, and 2332–7. Strains 1551–3 and 3712–3 were less correlated. The red dashed line represents the cutoff of 90% similarity in the amplification pattern used to determine the clonality of the strains.
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Dendrogram of six aEPEC presenting hybrid genotypes. Amplification profiles obtained in RAPD-PCR using primer 1247 (A) and primer 1283 (B) were evaluated by the BioNumerics and used to build the dendrogram. Note the proximity among strains 0811–4, 2071–1, 1482–11, and 2332–7. Strains 1551–3 and 3712–3 were less correlated. The red dashed line represents the cutoff of 90% similarity in the amplification pattern used to determine the clonality of the strains.

Journal: Frontiers in Microbiology

Article Title: The diverse virulence potential of atypical enteropathogenic Escherichia coli isolated from diarrhea: the emergence of a hybrid pathotype?

doi: 10.3389/fmicb.2025.1599350

Figure Lengend Snippet: Dendrogram of six aEPEC presenting hybrid genotypes. Amplification profiles obtained in RAPD-PCR using primer 1247 (A) and primer 1283 (B) were evaluated by the BioNumerics and used to build the dendrogram. Note the proximity among strains 0811–4, 2071–1, 1482–11, and 2332–7. Strains 1551–3 and 3712–3 were less correlated. The red dashed line represents the cutoff of 90% similarity in the amplification pattern used to determine the clonality of the strains.

Article Snippet: To determine a clonal relationship, the amplification pattern obtained for both primers was evaluated by the BioNumerics program version 7.6.3 (Applied Maths, Sint-Martens-Latem, Belgium).

Techniques: Amplification