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binding buffer  (MACHEREY NAGEL)


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    Structured Review

    MACHEREY NAGEL binding buffer
    Binding Buffer, supplied by MACHEREY NAGEL, used in various techniques. Bioz Stars score: 90/100, based on 5 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/binding+buffer/Binding+Buffer+PC/pmc04646318-248-3-37
    Average 90 stars, based on 5 article reviews
    binding buffer - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Binding Assay:

    Article Title: Variants of PpuLcc, a multi-dye decolorizing laccase from Pleurotus pulmonarius expressed in Pichia pastoris.
    Article Snippet: 9 A laccase of the basidiomycete Pleurotus pulmonarius (PpuLcc) possessed strong 10 decolorizing abilities towards artificial and natural dyes.. The PpuLcc was purified from the 11 culture supernatant via FPLC, and the corresponding gene cloned and expressed in 12 Pichia pastoris GS115.. To examine the impact of the C-terminal tail region and the signal 13 peptide on the recombinant expression of PpuLcc, a non-modified version or different 14 truncations (-2, -5, -13 AA) of the target protein were combined with different secretion 15 signals.

    Article Title: Structural Insights into Cargo Recognition by the Yeast PTS1 Receptor
    Article Snippet: The supernatant contained the soluble His 6 -Pex5p or His 6 -Pex5p-M536A and was loaded onto a nickel-NTA column (HisTrap HP, GE Healthcare) of an ÄKTAprime TM system (GE Healthcare). .. After washing with binding buffer I, proteins were eluted with an imidazole gradient up to 500 m m . Samples derived from cells expressing GST-tagged Pcs60p and its variants were loaded onto a glutathione 4B-agarose gravity-flow column (Macherey-Nagel, Düren, Germany). ..

    Article Title: qPCR-based relative quantification of the brown algal endophyte Laminarionema elsbetiae in Saccharina latissima : variation and dynamics of host—endophyte interactions
    Article Snippet: One hundred microliter lysozyme (20 mg mL −1 ) was added, and samples were shaken at 37 °C for 45 min. Twenty microliter proteinase K (20 mg mL −1 ) and 100 μL 20% SDS was added, and samples were homogenised by inversion and incubated at 55 °C for 1 h. The content was transferred to a new tube and 1 vol phenol-chloroform-isoamyl alcohol (25:24:1) was added; the phases were mixed and then centrifuged for 15 min at 4500 rpm at 4 °C. .. The supernatant was mixed with 1 vol of the binding buffer from the Nucleospin plant II kit (Macherey-Nagel, Germany), and the protocol recommended by the manufacturer was followed from this step onwards with two elution steps of 50 μL. .. DNA concentrations were measured with a Qubit Fluorometer (Thermo Fisher, USA) and diluted to 0.05 ng DNA μL −1 with autoclaved milliQ-filtered H 2 O.

    Article Title: Structural organizations of yeast RNase P and RNase MRP holoenzymes as revealed by UV-crosslinking studies of RNA-protein interactions
    Article Snippet: .. The samples containing disassembled RNases P/MRP were transferred in 1 mL of a binding buffer containing 8 M urea, 15 mM Tris-HCl (pH 7.8), 500 mM NaCl, 10 mM Na-imidazole (pH 7.4), 1% (v/v) Tween 20, and incubated with 50 μL of Ni-IDA resin (Macherey-Nagel) for 2 h at room temperature with intensive agitation. ..

    Derivative Assay:

    Article Title: Structural Insights into Cargo Recognition by the Yeast PTS1 Receptor
    Article Snippet: The supernatant contained the soluble His 6 -Pex5p or His 6 -Pex5p-M536A and was loaded onto a nickel-NTA column (HisTrap HP, GE Healthcare) of an ÄKTAprime TM system (GE Healthcare). .. After washing with binding buffer I, proteins were eluted with an imidazole gradient up to 500 m m . Samples derived from cells expressing GST-tagged Pcs60p and its variants were loaded onto a glutathione 4B-agarose gravity-flow column (Macherey-Nagel, Düren, Germany). ..

    Expressing:

    Article Title: Structural Insights into Cargo Recognition by the Yeast PTS1 Receptor
    Article Snippet: The supernatant contained the soluble His 6 -Pex5p or His 6 -Pex5p-M536A and was loaded onto a nickel-NTA column (HisTrap HP, GE Healthcare) of an ÄKTAprime TM system (GE Healthcare). .. After washing with binding buffer I, proteins were eluted with an imidazole gradient up to 500 m m . Samples derived from cells expressing GST-tagged Pcs60p and its variants were loaded onto a glutathione 4B-agarose gravity-flow column (Macherey-Nagel, Düren, Germany). ..

    Incubation:

    Article Title: Structural organizations of yeast RNase P and RNase MRP holoenzymes as revealed by UV-crosslinking studies of RNA-protein interactions
    Article Snippet: .. The samples containing disassembled RNases P/MRP were transferred in 1 mL of a binding buffer containing 8 M urea, 15 mM Tris-HCl (pH 7.8), 500 mM NaCl, 10 mM Na-imidazole (pH 7.4), 1% (v/v) Tween 20, and incubated with 50 μL of Ni-IDA resin (Macherey-Nagel) for 2 h at room temperature with intensive agitation. ..



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    Image Search Results


    CRISPR/Cas9 induces DNA damage and apoptosis in PGCs. (A) Flow cytometry analysis 24 h after electroporation, quantifying the proportion of Annexin V + /PI + cells. The horizontal axis indicates PI and the vertical axis Annexin V. The upper-left quadrant (Annexin V + /PI + ) represents late apoptotic cells, and the lower-right quadrant (Annexin V + only) represents early apoptotic cells. Upper panels: results after electroporation with Cas9 + various gRNAs; lower panels: results with dCas9 + various gRNAs. (B) Bar graph of Annexin V + /PI + percentages across groups. Cas9 editing induced a highly significant increase in late apoptosis. (C) γ-H 2 AX foci (green) detected by immunofluorescence 24 h after electroporation. Foci appear as discrete nuclear puncta; nuclei are counterstained with DAPI (blue). Scale bar = 10 µm. (D) Quantification of γ-H 2 AX foci per cell. Cas9 targeting resulted in a significant increase in γ-H 2 AX foci per cell, whereas dCas9 with sgRNA did not. Statistical significance determined by one-way ANOVA (p-values are indicated in the figure).

    Journal: Poultry Science

    Article Title: High genotoxicity of CRISPR/Cas9 versus limited efficacy of CRISPRi in chicken primordial germ cells

    doi: 10.1016/j.psj.2026.106722

    Figure Lengend Snippet: CRISPR/Cas9 induces DNA damage and apoptosis in PGCs. (A) Flow cytometry analysis 24 h after electroporation, quantifying the proportion of Annexin V + /PI + cells. The horizontal axis indicates PI and the vertical axis Annexin V. The upper-left quadrant (Annexin V + /PI + ) represents late apoptotic cells, and the lower-right quadrant (Annexin V + only) represents early apoptotic cells. Upper panels: results after electroporation with Cas9 + various gRNAs; lower panels: results with dCas9 + various gRNAs. (B) Bar graph of Annexin V + /PI + percentages across groups. Cas9 editing induced a highly significant increase in late apoptosis. (C) γ-H 2 AX foci (green) detected by immunofluorescence 24 h after electroporation. Foci appear as discrete nuclear puncta; nuclei are counterstained with DAPI (blue). Scale bar = 10 µm. (D) Quantification of γ-H 2 AX foci per cell. Cas9 targeting resulted in a significant increase in γ-H 2 AX foci per cell, whereas dCas9 with sgRNA did not. Statistical significance determined by one-way ANOVA (p-values are indicated in the figure).

    Article Snippet: After another centrifugation, the supernatant was removed and cells were resuspended in 500 μL of 1× Annexin V Binding Buffer (from Annexin V-FITC/PI Apoptosis Kit, Elabscience E-CK-A211).

    Techniques: CRISPR, Flow Cytometry, Electroporation, Immunofluorescence

    PGCs are more sensitive to DNA double-strand breaks than somatic cells. (A) Cell viability curves after 24 h treatment with increasing concentrations of etoposide (ETP; x-axis shows log 10 [ETP]). PGC viability dropped sharply even at low ETP doses, whereas CEF cells were more tolerant (viability data are mean ± SD of triplicates). (B) Apoptosis detection in PGCs treated with low-dose ETP. The proportion of Annexin V + /PI + cells (late apoptosis) was significantly elevated even at 0.03 µM ETP. (C) Western blot analysis of γ-H 2 AX protein in PGCs treated with varying ETP concentrations (left panel; β-actin as loading control). The bar graph (right) shows the ratio of γ-H 2 AX to β-actin band intensity, with a marked increase at 3 µM ETP (p-values are indicated in the figure). (D) Quantification of γ-H 2 AX foci per cell in THP-1 cells, male PGCs, and female PGCs after exposure to X-ray doses of 0, 2, 4, 6, and 8 Gy. After 48 h recovery, γ-H 2 AX foci increased significantly with higher radiation in THP-1, male PGCs, and female PGCs. Female PGC data points are red squares; male PGCs are blue squares; THP-1 are black circles. (E) Cell-cycle distribution of male vs. female PGCs after DNA damage. PGCs were irradiated (2, 4, 6 Gy), cultured 48 h, and analyzed by flow cytometry for cell-cycle phase (propidium iodide staining). Stacked bars show the percentage of cells in G 0 G 1 , S, and G 2 /M phases in untreated vs. irradiated cells. After damage, female PGCs predominantly arrested in G 2 /M (increased G 2 fraction), whereas male PGCs accumulated in S phase. Statistical significance by one-way ANOVA (p-values are indicated in the figure).

    Journal: Poultry Science

    Article Title: High genotoxicity of CRISPR/Cas9 versus limited efficacy of CRISPRi in chicken primordial germ cells

    doi: 10.1016/j.psj.2026.106722

    Figure Lengend Snippet: PGCs are more sensitive to DNA double-strand breaks than somatic cells. (A) Cell viability curves after 24 h treatment with increasing concentrations of etoposide (ETP; x-axis shows log 10 [ETP]). PGC viability dropped sharply even at low ETP doses, whereas CEF cells were more tolerant (viability data are mean ± SD of triplicates). (B) Apoptosis detection in PGCs treated with low-dose ETP. The proportion of Annexin V + /PI + cells (late apoptosis) was significantly elevated even at 0.03 µM ETP. (C) Western blot analysis of γ-H 2 AX protein in PGCs treated with varying ETP concentrations (left panel; β-actin as loading control). The bar graph (right) shows the ratio of γ-H 2 AX to β-actin band intensity, with a marked increase at 3 µM ETP (p-values are indicated in the figure). (D) Quantification of γ-H 2 AX foci per cell in THP-1 cells, male PGCs, and female PGCs after exposure to X-ray doses of 0, 2, 4, 6, and 8 Gy. After 48 h recovery, γ-H 2 AX foci increased significantly with higher radiation in THP-1, male PGCs, and female PGCs. Female PGC data points are red squares; male PGCs are blue squares; THP-1 are black circles. (E) Cell-cycle distribution of male vs. female PGCs after DNA damage. PGCs were irradiated (2, 4, 6 Gy), cultured 48 h, and analyzed by flow cytometry for cell-cycle phase (propidium iodide staining). Stacked bars show the percentage of cells in G 0 G 1 , S, and G 2 /M phases in untreated vs. irradiated cells. After damage, female PGCs predominantly arrested in G 2 /M (increased G 2 fraction), whereas male PGCs accumulated in S phase. Statistical significance by one-way ANOVA (p-values are indicated in the figure).

    Article Snippet: After another centrifugation, the supernatant was removed and cells were resuspended in 500 μL of 1× Annexin V Binding Buffer (from Annexin V-FITC/PI Apoptosis Kit, Elabscience E-CK-A211).

    Techniques: Western Blot, Control, Irradiation, Cell Culture, Flow Cytometry, Staining