binary alignment map (bam) files (Broad Institute Inc)
90
Structured Review
Broad Institute Inc
binary alignment map (bam) files
Binary Alignment Map (Bam) Files, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/binary+matlab%C2%AE+files/binary+alignment+map++bam++files/pmc08200776-59-1-34
Average 90 stars, based on 1 article reviews
Binary Alignment Map (Bam) Files, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/binary+matlab%C2%AE+files/binary+alignment+map++bam++files/pmc08200776-59-1-34
Average 90 stars, based on 1 article reviews
binary alignment map (bam) files - by Bioz Stars,
2026-09
90/100 stars
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other:Article Title: Integrating somatic CNV and gene expression in breast cancers from women with PTEN hamartoma tumor syndrome. Article Snippet: The raw data were quality controlled, aligned and sorted by the computational pipeline at the Broad Institute to generate binary alignment map (BAM) files for tumor and blood samples separately. Article Title: Distribution and Medical Impact of Loss-of-Function Variants in the Finnish Founder Population Article Snippet: Raw Binary Sequence Alignment/Map (BAM) files from the various projects were jointly processed at the Broad Institute and joint variant calling was performed on all exomes to minimize batch differences. Article Title: Whole-Exome Sequencing Analysis of Oral Squamous Cell Carcinoma Delineated by Tobacco Usage Habits Article Snippet: These binary alignment map (BAM) files were assessed for biases due to PCR duplicates, and likely duplicates were flagged using MarkDuplicates tool of Picard package (v1.140) of the GATK tool suite (Genome Analysis Toolkit, Broad Institute). Article Title: Genetic linkage disequilibrium of deleterious mutations in threatened mammals Article Snippet: Sequence Alignment/Map (SAM) format files were imported to Picard v2.0.1 (Broad Institute, ) for cleaning, sorting, removing duplicated reads, and converted to Binary Alignment/Map (BAM) format files. Sequencing:Article Title: Glucocorticoid receptor expression is associated with inferior overall survival independent of BRCA mutation status in ovarian cancer. Article Snippet: Objective High glucocorticoid receptor (GR) protein expression is associated with decreased progression-free survival in ovarian cancer patients and decreased sensitivity to chemotherapy in preclinical models.. Prior studies suggest wild type BRCA1 promotes GR activation.. The objective of this study was to characterize the relationship of tumor GR gene expression to outcome in ovarian cancer, and to evaluate the relationship of GR expression with BRCA status. Generated:Article Title: Glucocorticoid receptor expression is associated with inferior overall survival independent of BRCA mutation status in ovarian cancer. Article Snippet: Objective High glucocorticoid receptor (GR) protein expression is associated with decreased progression-free survival in ovarian cancer patients and decreased sensitivity to chemotherapy in preclinical models.. Prior studies suggest wild type BRCA1 promotes GR activation.. The objective of this study was to characterize the relationship of tumor GR gene expression to outcome in ovarian cancer, and to evaluate the relationship of GR expression with BRCA status. |
