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beadstudio software and the gentrain2 calling algorithm  (Illumina Inc)


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    Illumina Inc beadstudio software and the gentrain2 calling algorithm
    Beadstudio Software And The Gentrain2 Calling Algorithm, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/beadstudio+calling+algorithm/genomestudio+gentrain2+0+algorithm/pmc03893755-61-10-11
    Average 90 stars, based on 1 article reviews
    beadstudio software and the gentrain2 calling algorithm - by Bioz Stars, 2026-10
    90/100 stars

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    Article Title: Copy number variants as modifiers of breast cancer risk for BRCA1/BRCA2 pathogenic variant carriers.
    Article Snippet: Probes that failed to cluster using Illumina’s Gentrain algorithm (n= 4857) and probes on the Y chromosome were removed from these results.

    Article Title: Fruit size and firmness QTL alleles of breeding interest identified in a sweet cherry ‘Ambrunés’ × ‘Sweetheart’ population
    Article Snippet: The SNP genotypes were clustered, reviewed and filtered using the Genotyping Module of GenomeStudio® software, using the build-in algorithm ‘Gentrain2’ for all samples with GenCall score above 0.15 (v2011.1, Illumina Inc., San Diego, CA, USA).

    Article Title: β 2 -Adrenergic Receptor Gene Affects the Heart Rate Response of β -Blockers: Evidence From 3 Clinical Studies
    Article Snippet: SNP genotypes were called using GenTrain2 Illumina calling algorithm (Illumina).

    Article Title: Variants in the β-globin locus are associated with pneumonia in African American children
    Article Snippet: In brief, genotype calling was performed with Illumina GenomeStudio (module 1.9.4, algorithm GenTrain 2.0).

    Article Title: Identification of a regulatory pathway governing TRAF1 via an arthritis-associated non-coding variant
    Article Snippet: The Illumina GenomeStudio GenTrain2.0 algorithm was used to recluster all 18,351 samples.

    Article Title: Identification of a regulatory pathway governing TRAF1 via an arthritis-associated non-coding variant
    Article Snippet: The Illumina GenomeStudio GenTrain2.0 algorithm was used to re-cluster all 18,351 samples.

    Article Title: Copy number variants as modifiers of breast cancer risk for BRCA1 / BRCA2 pathogenic variant carriers
    Article Snippet: Probes that failed to cluster using Illumina’s Gentrain algorithm ( n = 4857) and probes on the Y chromosome were removed from these results.

    Article Title: Detecting rare copy number variants from Illumina genotyping arrays with the CamCNV pipeline: Segmentation of z-scores improves detection and reliability.
    Article Snippet: To exclude probes likely to represent technical failures at the chip genotyping level we exclude those not clustered by the Illumina Gentrain algorithm (Gentrain score < 0.15) and low‐intensity probes (Illumina metric AB R Mean < 0.2).



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