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SourceForge net bbmap of the bbtools suite
Bbmap Of The Bbtools Suite, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbtools+bbmap/bbtools+suite/pm38753873-385-33-37
Average 90 stars, based on 1 article reviews
bbmap of the bbtools suite - by Bioz Stars, 2026-11
90/100 stars

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Article Title: Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution
Article Snippet: A maximum coverage cutoff of (1.5 * kmer coverage peak) and a maximum GC fraction of 0.40 was used to exclude nuclear content using BBTools (B. Bushnell: BBTools software package, http://sourceforge.net/projects/bbmap ) version 38.79 [kmer count exact.sh default; bbnorm.sh pigz passes = 1 bits = 16 target = 9999999 min = 162; bbduk.sh maxgc = 0.4].

Article Title: Phocaeicola vulgatus shapes the long-term growth dynamics and evolutionary adaptations of Clostridioides difficile
Article Snippet: 3.2 mm stainless steel bead , BioSpec Products , Cat# 11079132ss.

Software:

Article Title: Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil.
Article Snippet: .. B. Bushnell, BBTools Software Package. (2014), https://sourceforge.net/projects/bbmap/. ..

Article Title: Compositions useful in treatment of metachromatic leukodystrophy
Article Snippet: Sequencing reads are automatically de-multiplexed and adapter-trimmed by the MiSeq computer. .. The trimmed reads for each plasmid are aligned to the corresponding reference sequence, and sequence variants are called using BBTools bioinformatics software suite (sourceforge.net/projects/bbmap). .. Vector Genome Identity: DNA Sequencing AAV vector (2.00×1011 GC) is treated with Baseline Zero endonuclease and Plasmid Safe DNAse to eliminate non-encapsulated DNA in the environment and then incubated for 10 min at 95° C. in 1× phosphate-buffered saline (PBS) and 0.5% sodium dodecyl sulfate (SDS) to denature the vector genome.

Article Title: SARS-CoV-2 nsp15 enhances viral virulence by subverting host antiviral defenses.
Article Snippet: .. B. Bushnell, BBTools software package (2014). https://sourceforge.net/projects/bbmap/. ..

Article Title: Circulating microRNAs as potential biomarkers of hypertrophic cardiomyopathy phenotypic expression
Article Snippet: .. The FASTQ files were pre-processed with BBTools software package ( BBMap download | SourceForge.net) to remove adapters as described in the sequencing library documentation and to trim low-quality regions, with a quality lower than 26. ..

Article Title: The SUbventral-Gland Regulator (SUGR-1) of nematode virulence.
Article Snippet: .. B. Bushnell, BBTools software package (BBTools version 38.18, 2014). https://sourceforge.net/ projects/bbmap/. ..

Plasmid Preparation:

Article Title: Compositions useful in treatment of metachromatic leukodystrophy
Article Snippet: Sequencing reads are automatically de-multiplexed and adapter-trimmed by the MiSeq computer. .. The trimmed reads for each plasmid are aligned to the corresponding reference sequence, and sequence variants are called using BBTools bioinformatics software suite (sourceforge.net/projects/bbmap). .. Vector Genome Identity: DNA Sequencing AAV vector (2.00×1011 GC) is treated with Baseline Zero endonuclease and Plasmid Safe DNAse to eliminate non-encapsulated DNA in the environment and then incubated for 10 min at 95° C. in 1× phosphate-buffered saline (PBS) and 0.5% sodium dodecyl sulfate (SDS) to denature the vector genome.

Sequencing:

Article Title: Compositions useful in treatment of metachromatic leukodystrophy
Article Snippet: Sequencing reads are automatically de-multiplexed and adapter-trimmed by the MiSeq computer. .. The trimmed reads for each plasmid are aligned to the corresponding reference sequence, and sequence variants are called using BBTools bioinformatics software suite (sourceforge.net/projects/bbmap). .. Vector Genome Identity: DNA Sequencing AAV vector (2.00×1011 GC) is treated with Baseline Zero endonuclease and Plasmid Safe DNAse to eliminate non-encapsulated DNA in the environment and then incubated for 10 min at 95° C. in 1× phosphate-buffered saline (PBS) and 0.5% sodium dodecyl sulfate (SDS) to denature the vector genome.

Article Title: Circulating microRNAs as potential biomarkers of hypertrophic cardiomyopathy phenotypic expression
Article Snippet: .. The FASTQ files were pre-processed with BBTools software package ( BBMap download | SourceForge.net) to remove adapters as described in the sequencing library documentation and to trim low-quality regions, with a quality lower than 26. ..



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KEY RESOURCES TABLE

Journal: Neuron

Article Title: Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control

doi: 10.1016/j.neuron.2018.01.023

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: BBMap (BBTools) , Brian Bushnell , https://sourceforge.net/projects/bbmap/.

Techniques: Virus, Recombinant, Software