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SourceForge net bbduk shell script
Bbduk Shell Script, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbduk+shell+script/bbduk+sh/pm37676521-351-18-33
Average 90 stars, based on 1 article reviews
bbduk shell script - by Bioz Stars, 2026-10
90/100 stars

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Sequencing:

Article Title: Monkeyflower ( Mimulus ) uncovers the evolutionary basis of the eukaryote telomere sequence variation
Article Snippet: The reads were subjected to quality control trimming using the bbduk.sh script in the BBMap package v39.01 ( https://sourceforge.net/projects/bbmap/ ).

Article Title: Increased Nutrient Levels Enhance Bacterial Exopolysaccharides Production in the Context of Algae
Article Snippet: Messenger RNA reads were quality trimmed and end repaired using the bbduk and repair scripts from the BBMap v39.01 ( https://sourceforge.net/projects/bbmap/ ).

Article Title: Abundant and metabolically flexible bacterial lineages underlie a vast potential for rubisco-mediated carbon fixation in the dark ocean.
Article Snippet: Next, forward and reverse read files were trimmed using bbduk.sh from BBTools (sourceforge.net/projects/bbmap/) (ref = adapters ktrim = r k = 23 mink = 11 hdist = 1 tbo qtrim = r trimq = 25 minlen = 20).

Article Title: Infectome analysis of bat kidneys from Yunnan province, China, reveals novel henipaviruses related to Hendra and Nipah viruses and prevalent bacterial and eukaryotic microbes
Article Snippet: Adapter sequences were removed from the sequencing reads, and initial quality control was performed using the pipeline implemented in bbduk.sh ( https://sourceforge.net/projects/bbmap/ ).

Article Title: De novo genome assemblies of the dwarf honey bee subgenus Micrapis : Apis andreniformis and Apis florea
Article Snippet: Illumina short reads were first trimmed for adapter sequences, low-quality bases, and contaminants using the bbduk.sh script from BBMap v38.05 ( https://sourceforge.net/projects/bbmap ) and the following parameters: -Xmx32g ktrim=r k=31 mink=11 hdist=1 tpe tbo qtrim=r trimq=10.

Article Title: Monkeyflower (Mimulus) uncovers the evolutionary basis of the eukaryote telomere sequence variation.
Article Snippet: The reads were subjected to quality control trimming using the bbduk.sh script in the BBMap package v39.01 (https://sourceforge.net/projects/bbmap/).

Article Title: Abundant and metabolically flexible bacterial lineages underlie a vast potential for rubisco-mediated carbon fixation in the dark ocean
Article Snippet: Next, forward and reverse read files were trimmed using bbduk.sh from BBTools (sourceforge.net/projects/bbmap/) ( ref = adapters ktrim = r k = 23 mink = 11 hdist = 1 tbo qtrim = r trimq = 25 minlen = 20 ).

Article Title: Infectome analysis of bat kidneys from Yunnan province, China, reveals novel henipaviruses related to Hendra and Nipah viruses and prevalent bacterial and eukaryotic microbes.
Article Snippet: Adapter sequences were removed from the sequencing reads, and initial quality control was performed using the pipeline implemented in bbduk.sh (https://sourceforge.net/projects/bbmap/).

Control:

Article Title: Monkeyflower ( Mimulus ) uncovers the evolutionary basis of the eukaryote telomere sequence variation
Article Snippet: The reads were subjected to quality control trimming using the bbduk.sh script in the BBMap package v39.01 ( https://sourceforge.net/projects/bbmap/ ).

Article Title: Increased Nutrient Levels Enhance Bacterial Exopolysaccharides Production in the Context of Algae
Article Snippet: Messenger RNA reads were quality trimmed and end repaired using the bbduk and repair scripts from the BBMap v39.01 ( https://sourceforge.net/projects/bbmap/ ).

Article Title: Abundant and metabolically flexible bacterial lineages underlie a vast potential for rubisco-mediated carbon fixation in the dark ocean.
Article Snippet: Next, forward and reverse read files were trimmed using bbduk.sh from BBTools (sourceforge.net/projects/bbmap/) (ref = adapters ktrim = r k = 23 mink = 11 hdist = 1 tbo qtrim = r trimq = 25 minlen = 20).

Article Title: Infectome analysis of bat kidneys from Yunnan province, China, reveals novel henipaviruses related to Hendra and Nipah viruses and prevalent bacterial and eukaryotic microbes
Article Snippet: Adapter sequences were removed from the sequencing reads, and initial quality control was performed using the pipeline implemented in bbduk.sh ( https://sourceforge.net/projects/bbmap/ ).

Article Title: De novo genome assemblies of the dwarf honey bee subgenus Micrapis : Apis andreniformis and Apis florea
Article Snippet: Illumina short reads were first trimmed for adapter sequences, low-quality bases, and contaminants using the bbduk.sh script from BBMap v38.05 ( https://sourceforge.net/projects/bbmap ) and the following parameters: -Xmx32g ktrim=r k=31 mink=11 hdist=1 tpe tbo qtrim=r trimq=10.

Article Title: Monkeyflower (Mimulus) uncovers the evolutionary basis of the eukaryote telomere sequence variation.
Article Snippet: The reads were subjected to quality control trimming using the bbduk.sh script in the BBMap package v39.01 (https://sourceforge.net/projects/bbmap/).

Article Title: Abundant and metabolically flexible bacterial lineages underlie a vast potential for rubisco-mediated carbon fixation in the dark ocean
Article Snippet: Next, forward and reverse read files were trimmed using bbduk.sh from BBTools (sourceforge.net/projects/bbmap/) ( ref = adapters ktrim = r k = 23 mink = 11 hdist = 1 tbo qtrim = r trimq = 25 minlen = 20 ).

Article Title: Infectome analysis of bat kidneys from Yunnan province, China, reveals novel henipaviruses related to Hendra and Nipah viruses and prevalent bacterial and eukaryotic microbes.
Article Snippet: Adapter sequences were removed from the sequencing reads, and initial quality control was performed using the pipeline implemented in bbduk.sh (https://sourceforge.net/projects/bbmap/).

RNA Sequencing:

Article Title: Monkeyflower ( Mimulus ) uncovers the evolutionary basis of the eukaryote telomere sequence variation
Article Snippet: The reads were subjected to quality control trimming using the bbduk.sh script in the BBMap package v39.01 ( https://sourceforge.net/projects/bbmap/ ).

Article Title: Increased Nutrient Levels Enhance Bacterial Exopolysaccharides Production in the Context of Algae
Article Snippet: Messenger RNA reads were quality trimmed and end repaired using the bbduk and repair scripts from the BBMap v39.01 ( https://sourceforge.net/projects/bbmap/ ).

Article Title: Abundant and metabolically flexible bacterial lineages underlie a vast potential for rubisco-mediated carbon fixation in the dark ocean.
Article Snippet: Next, forward and reverse read files were trimmed using bbduk.sh from BBTools (sourceforge.net/projects/bbmap/) (ref = adapters ktrim = r k = 23 mink = 11 hdist = 1 tbo qtrim = r trimq = 25 minlen = 20).

Article Title: Infectome analysis of bat kidneys from Yunnan province, China, reveals novel henipaviruses related to Hendra and Nipah viruses and prevalent bacterial and eukaryotic microbes
Article Snippet: Adapter sequences were removed from the sequencing reads, and initial quality control was performed using the pipeline implemented in bbduk.sh ( https://sourceforge.net/projects/bbmap/ ).

Article Title: De novo genome assemblies of the dwarf honey bee subgenus Micrapis : Apis andreniformis and Apis florea
Article Snippet: Illumina short reads were first trimmed for adapter sequences, low-quality bases, and contaminants using the bbduk.sh script from BBMap v38.05 ( https://sourceforge.net/projects/bbmap ) and the following parameters: -Xmx32g ktrim=r k=31 mink=11 hdist=1 tpe tbo qtrim=r trimq=10.

Article Title: Monkeyflower (Mimulus) uncovers the evolutionary basis of the eukaryote telomere sequence variation.
Article Snippet: The reads were subjected to quality control trimming using the bbduk.sh script in the BBMap package v39.01 (https://sourceforge.net/projects/bbmap/).

Article Title: Abundant and metabolically flexible bacterial lineages underlie a vast potential for rubisco-mediated carbon fixation in the dark ocean
Article Snippet: Next, forward and reverse read files were trimmed using bbduk.sh from BBTools (sourceforge.net/projects/bbmap/) ( ref = adapters ktrim = r k = 23 mink = 11 hdist = 1 tbo qtrim = r trimq = 25 minlen = 20 ).

Article Title: Infectome analysis of bat kidneys from Yunnan province, China, reveals novel henipaviruses related to Hendra and Nipah viruses and prevalent bacterial and eukaryotic microbes.
Article Snippet: Adapter sequences were removed from the sequencing reads, and initial quality control was performed using the pipeline implemented in bbduk.sh (https://sourceforge.net/projects/bbmap/).



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90
SourceForge net bbduk shell script
Bbduk Shell Script, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbduk+shell+script/bbduk+sh/pm37676521-351-18-33
Average 90 stars, based on 1 article reviews
bbduk shell script - by Bioz Stars, 2026-10
90/100 stars
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