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basic local alignment search tool for protein sequences (blastp)  (Biotechnology Information)

 
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    Structured Review

    Biotechnology Information basic local alignment search tool for protein sequences (blastp)
    Basic Local Alignment Search Tool For Protein Sequences (Blastp), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/basic+local+alignment+sequence+tools/basic+local+alignment+search+tool+for+protein+sequences++blastp+/pm40266755-141-19-7
    Average 90 stars, based on 1 article reviews
    basic local alignment search tool for protein sequences (blastp) - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    other:

    Article Title: BmSV2A and BmSV2B Are Involved in Regulating GABAergic Neuron-Related Gene Expression in the Silkworm, Bombyx mori .
    Article Snippet: By searching in the National Center for Biotechnology Information (NCBI) database using the Basic Local Alignment Search Tool for protein sequences (BLASTp), we found a 32.2% similarity between BmSV2A and SV2A proteins and a 35.4% similarity between BmSV2B and SV2B proteins, which showed the same MFS structural domain (Figures S2 and S3).

    Article Title: The ability to induce heat shock transcription factor-regulated genes in response to lethal heat stress is associated with thermotolerance in tomato cultivars.
    Article Snippet: For GO annotations of ITAG3.2 proteins, the closest homolog of each protein was identified from Arabidopsis TAIR10 proteins by using the Protein–Protein Basic Local Alignment Search Tool (BLASTP) search (National Center for Biotechnology Information BLAST 2.2.29+), and GO annotations of the Arabidopsis homolog were assigned to each ITAG3.2 protein.

    Article Title: BmSV2A and BmSV2B Are Involved in Regulating GABAergic Neuron-Related Gene Expression in the Silkworm, Bombyx mori
    Article Snippet: By searching in the National Center for Biotechnology Information (NCBI) database using the Basic Local Alignment Search Tool for protein sequences (BLASTp), we found a 32.2% similarity between BmSV2A and SV2A proteins and a 35.4% similarity between BmSV2B and SV2B proteins, which showed the same MFS structural domain ( ).

    Article Title: Congenital muscular dystrophies and myopathies: the leading cause of genetic muscular disorders in eleven Chinese families.
    Article Snippet: The protein sequences of human ATL1 (NP_056999.2), KLHL40 (NP_689606.2), FKRP (NP_077277.1), ACTA1 (NP_001091.1), MSTO1 (NP_060586.2) and RYR1 (NP_000531.2) and those of other nine vertebrates (if available) were obtained and aligned with the Protein database and Constraint-based Multiple Alignment Tool (COBALT) of National Center for Biotechnology Information (NCBI; https://www.nlm.nih.gov/) to evaluate where the seven amino acid changes occurred at conservative sites.

    Protein-Protein interactions:

    Article Title: Subtractive proteo-genomics and model-based druggability analyses prioritized nitrate reductase-A subunit-α as potential therapeutic target against MDR pneumonia; a homology-based approach.
    Article Snippet: .. Abbreviations MDR Multi-Drug Resistant S. aureus Staphylococcus aureus S. pneumoniae Streptococcuspneumoniae H. influenza Haemophilusinfluenzae K. pneumoniae Klebsiella pneumoniae NCBI National Center for Biotechnology Information BLASTp Basic Local Alignment Search Tool protein CD-hit Cluster Database at High Identity with Tolerance DEG Database of Essential Genes VFDB Virulence Factor Database ARG-ANNOT Antibiotic Resistance Gene-ANNOTation CELLO2GO Subcellular Localization Predictor DrugBank Database of Drug and Drug Target Information KEGG Kyoto Encyclopedia of Genes and Genomes KO KEGG Orthology PPI Protein–Protein Interaction PDB Protein Data Bank ERRAT Protein Structure Evaluation Suite RAM-PAGE Ramachandran Plot Analysis CB-Dock CavityPlus Binding-site Analysis Tool ADME Absorption, Distribution, Metabolism, and Excretion Supplementary Information The online version contains supplementary material available at https:// doi. org/ 10. ..

    Binding Assay:

    Article Title: Subtractive proteo-genomics and model-based druggability analyses prioritized nitrate reductase-A subunit-α as potential therapeutic target against MDR pneumonia; a homology-based approach.
    Article Snippet: .. Abbreviations MDR Multi-Drug Resistant S. aureus Staphylococcus aureus S. pneumoniae Streptococcuspneumoniae H. influenza Haemophilusinfluenzae K. pneumoniae Klebsiella pneumoniae NCBI National Center for Biotechnology Information BLASTp Basic Local Alignment Search Tool protein CD-hit Cluster Database at High Identity with Tolerance DEG Database of Essential Genes VFDB Virulence Factor Database ARG-ANNOT Antibiotic Resistance Gene-ANNOTation CELLO2GO Subcellular Localization Predictor DrugBank Database of Drug and Drug Target Information KEGG Kyoto Encyclopedia of Genes and Genomes KO KEGG Orthology PPI Protein–Protein Interaction PDB Protein Data Bank ERRAT Protein Structure Evaluation Suite RAM-PAGE Ramachandran Plot Analysis CB-Dock CavityPlus Binding-site Analysis Tool ADME Absorption, Distribution, Metabolism, and Excretion Supplementary Information The online version contains supplementary material available at https:// doi. org/ 10. ..

    Sequencing:

    Article Title: ZmICE1a regulates the defence-storage trade-off in maize endosperm.
    Article Snippet: The endosperm of cereal grains feeds the entire world as a major food supply; however, little is known about its defence response during endosperm development.. The Inducer of CBF Expression 1 (ICE1) is a well-known regulator of cold tolerance in plants.. ICE1 has a monocot-specific homologue that is preferentially expressed in cereal endosperms but with an unclear regulatory function.

    Functional Assay:

    Article Title: Peptidomic profiling of endogenous peptides in the spleens of mouse models of Graves' disease
    Article Snippet: .. Subsequently, the functional domains of proteins were analyzed using the protein function domain analysis tool at the National Center for Biotechnology Information (NCBI) ( https://blast.ncbi.nlm.nih.gov/ ). ..



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