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transcript assemblertm software  (Paracel BLAST)

 
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    Structured Review

    Paracel BLAST transcript assemblertm software
    Transcript Assemblertm Software, supplied by Paracel BLAST, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/basic+local+alignment+search+tool+software+program/transcript+assemblertm+software/us08716023-469-5-8
    Average 90 stars, based on 1 article reviews
    transcript assemblertm software - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Software:

    Article Title: Methods for eliminating or reducing the expression of a genes in a filamentous fungal strains
    Article Snippet: As a quality check, the cDNA clones from approximately 360 randomly picked colonies were purified by rolling circle amplification using an Amersham TempliPhi Kit and analyzed by DNA sequencing (70 from Reaction 1, 96 from Reaction 2, and 192 from Reaction 3). .. Clustering of the sequences using Transcript AssemblerTM software (Paracel, Inc., Pasadena, Calif.) showed that each pool contained a high percentage of non-redundant clones—76% for Reaction 1, 90% for Reaction 2, and 67% for Reaction 3. ..

    Clone Assay:

    Article Title: Methods for eliminating or reducing the expression of a genes in a filamentous fungal strains
    Article Snippet: As a quality check, the cDNA clones from approximately 360 randomly picked colonies were purified by rolling circle amplification using an Amersham TempliPhi Kit and analyzed by DNA sequencing (70 from Reaction 1, 96 from Reaction 2, and 192 from Reaction 3). .. Clustering of the sequences using Transcript AssemblerTM software (Paracel, Inc., Pasadena, Calif.) showed that each pool contained a high percentage of non-redundant clones—76% for Reaction 1, 90% for Reaction 2, and 67% for Reaction 3. ..



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    Image Search Results


    A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling

    A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling