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blast ring image generator brig tool v0.95  (SourceForge net)

 
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    SourceForge net blast ring image generator brig tool v0.95
    Blast Ring Image Generator Brig Tool V0.95, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/basic+local+alignment+search+tool+software+program/blast+ring+image+generator+brig/pmc10209314-99-17-25
    Average 90 stars, based on 1 article reviews
    blast ring image generator brig tool v0.95 - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Plasmid Preparation:

    Article Title: Whole-genome sequencing of coexisting bla NDM-1 , bla KPC-2 , and mcr-9.1 in a clinical carbapenem-resistant Citrobacter braakii isolate.
    Article Snippet: .. BLAST Ring Image Generator (http://sourceforge.net/projects/brig/) was used to compare the plasmid sequences. ..

    Article Title: First Report of mcr-10 in a Seafood-Borne ESBL-Producing Enterobacter xiangfangensis Strain
    Article Snippet: An in silico genome-genome comparison based on digital DNA-DNA hybridization (dDDH) was performed using the Type (Strain) Genome Sever (TYGS) ( https://tygs.dsmz.de/user_requests/new ). .. BLAST Ring Image Generator ( https://sourceforge.net/projects/brig/ ) was used to produce a circular map to compare the plasmid identified in this study with similar plasmids in the NCBI database. ..

    Article Title: Genomic evolution and dissemination of non-conjugative virulence plasmid of ST65 carbapenem-resistant and hypervirulent Klebsiella pneumoniae strains in a Chinese hospital
    Article Snippet: .. Circular plasmid maps for comparative analysis were generated using the BLAST Ring Image Generator (BRIG) ( http://sourceforge.net/projects/brig ). ..

    other:

    Article Title: A novel thermostable lytic phage vB_EF_Enf3_CCASU-2024-3 against clinical Enterococcus faecium and Enterococcus faecalis
    Article Snippet: The creation of the circular image was performed using the BLAST Ring Image Generator (BRIG) tool v0.95 ( https://sourceforge.net/projects/brig/ , accessed on 29 August 2024)

    Article Title: Genetic Evolution of Antibiotic Resistance and Virulence Genes in Escherichia coli Isolates from a Chinese Hospital over a 12-Year Period
    Article Snippet: The BLAST Ring Image Generator (BRIG) software ( http://sourceforge.net/projects/brig (accessed on 1 January 2024)) was used to draw genome and plasmid circle diagrams based on BLAST+ (parameter: -evalue 1 × 10 −5 ), and vector drawings were performed using EasyFig for analysis.

    Article Title: Tracing the evolutionary trajectory of the IncP-2 plasmid co-harboring bla IMP-45 and bla VIM-1 : an outbreak of Pseudomonas aeruginosa co-producing IMP-45 and VIM-1 carbapenemases in China
    Article Snippet: Alignments and visualization of plasmids were generated by BLAST Ring Image Generator (BRIG) software version 0.95 ( https://sourceforge.net/projects/brig ).

    Article Title: Pseudomonas aeruginosa High-Risk Sequence Type 463 Co-Producing KPC-2 and AFM-1 Carbapenemases, China, 2020–2022
    Article Snippet: Alignments and visualization of plasmids were generated by BLAST Ring Image Generator (BRIG) software version 0.95 (https://sourceforge.net/projects/brig).

    Generated:

    Article Title: Genomic evolution and dissemination of non-conjugative virulence plasmid of ST65 carbapenem-resistant and hypervirulent Klebsiella pneumoniae strains in a Chinese hospital
    Article Snippet: .. Circular plasmid maps for comparative analysis were generated using the BLAST Ring Image Generator (BRIG) ( http://sourceforge.net/projects/brig ). ..



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    Image Search Results


    A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling

    A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling