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zen blue software  (Carl Zeiss)


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    Structured Review

    Carl Zeiss zen blue software
    KEY RESOURCES TABLE
    Zen Blue Software, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/basic+local+alignment+search+tool+software+program/software+zen/pmc07395960-635-247-250
    Average 90 stars, based on 1 article reviews
    zen blue software - by Bioz Stars, 2026-11
    90/100 stars

    Images

    1) Product Images from "Modulation of Peptidoglycan Synthesis by Recycled Cell Wall Tetrapeptides"

    Article Title: Modulation of Peptidoglycan Synthesis by Recycled Cell Wall Tetrapeptides

    Journal: Cell reports

    doi: 10.1016/j.celrep.2020.107578

    KEY RESOURCES TABLE
    Figure Legend Snippet: KEY RESOURCES TABLE

    Techniques Used: Virus, Recombinant, DNA Purification, DNA Library Preparation, Software

    Related Articles

    Software:

    Article Title: NKG2D receptor ligands are cell surface biomarkers for injured murine and human nociceptive sensory neurons
    Article Snippet: Super-resolution images of recombinant NKG2D receptor protein bound to Mrgprd + DRG neurites were acquired on a Yokogawa CSU-W1SoRa Spinning Disc confocal microscope fitted with 4 Laser lines (405, 488, 561 and 640nm). .. 3D rendering and animation was performed using Zen 2012 software (Zeiss). ..

    Article Title: Compositions and methods for making epigenetic modifications
    Article Snippet: Brain sections were imaged as z-stack tile scans on a Zeiss LSM 980 with Airyscan 2 Laser Scanning Confocal with a 20× objective. .. Image Analysis Maximum orthogonal projections and stitching of z-stack tile scales was performed using ZEN Blue software (Zeiss). ..

    Microscopy:

    Article Title: Green synthesis, characterization and in vitro biomedical applications of Coldenia procumbens Linn. Synthesized zinc oxide nanoparticles (ZnONPs)
    Article Snippet: Coldenia procumbens Linn. is widely used in traditional medicine to treat a number of diseases and is extensively available in India.. Zinc oxide nanoparticles (ZnO NPs) have been used in a variety of applications, including biomedical sciences, agriculture, food processing, medication delivery, and cancer treatment.. This present study focuses on green synthesis of ZnO NPs from C. procumbens plant leaves, characterization, and biomedical applications.

    Derivative Assay:

    Article Title: Green synthesis, characterization and in vitro biomedical applications of Coldenia procumbens Linn. Synthesized zinc oxide nanoparticles (ZnONPs)
    Article Snippet: Coldenia procumbens Linn. is widely used in traditional medicine to treat a number of diseases and is extensively available in India.. Zinc oxide nanoparticles (ZnO NPs) have been used in a variety of applications, including biomedical sciences, agriculture, food processing, medication delivery, and cancer treatment.. This present study focuses on green synthesis of ZnO NPs from C. procumbens plant leaves, characterization, and biomedical applications.

    other:

    Article Title: Compositions and methods for the diagnosis and treatment of lymphatic system disorders
    Article Snippet: Confocal z-stacks of images were superimposed using Zeiss Zen software's maximum intensity projection function.


    Article Title: Nodal modulator (NOMO) is a force-bearing transmembrane protein required for muscle differentiation
    Article Snippet: Imaging was performed on an LSM 880 laser scanning confocal microscope (Zeiss) using a C Plan-Apochromat 63×/1.40 oil DIC M27 objective using ZEN 2.1 software (Zeiss) with a stage maintained at 37°C and 5% CO 2 .

    Article Title: Metabolic adaptations of micrometastases alter EV production to generate invasive microenvironments
    Article Snippet: Images were acquired and processed using the software Zen LSM 2.1 Black (Zeiss), using the Airyscan processing module set to “Auto.” Quantification of ceramide intensity (green channel) was performed on projections of cells per field of view (sum of z-slices; 10 slices/field of view, 6 fields of view per biological replicate) and normalized to phalloidin area (red channel) using ImageJ software ( ).

    Article Title: A conserved role for centriolar satellites in translation of centrosomal and ciliary proteins
    Article Snippet: Maximum projections from 4 z-stacks were stitched together using ZEN software (Zeiss) to cover the whole testis.



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    Image Search Results


    A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus hsp65 gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from this study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1H.1, 5H.1, 6H.1, 7H.1, 10H.1, 15H.1, 18H.1, 20H.1, 22H.1, 22H.2, 23H.1, 26H.1, 27H.1, and 27H.2.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling

    A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Journal: IJID Regions

    Article Title: Targeted deep sequencing of mycobacteria species from extrapulmonary sites not identified by routine line probe assays: A retrospective laboratory analysis of stored clinical cultures

    doi: 10.1016/j.ijregi.2024.100464

    Figure Lengend Snippet: A phylogenetic tree was generated using consensus rpoB gene sequences of unidentified mycobacteria species obtained through Oxford Nanopore Technology amplicon-based deep sequencing. The tree illustrates slow-growing mycobacteria represented by red branches and rapid growers indicated by blue branches. Unidentified Mycobacterium species sequences from the study are labeled in red. Members of the Mycobacterium tuberculosis complex are highlighted in the yellow range. The scale bar expresses the average number of nucleotide substitutions per site. Circular markers signify the bootstrap support of branches within the tree. The isolates included in the construction of the phylogenetic tree are those represented by the reads listed in : 1R.1, 2R.1, 6R.1, 8R.1, 9R.1, 10R.1, 10R.2, 10R.3, 10R.4, 10R.5, 15R.1, 16R.1, 18R.1, 20R.1, 21R.1, 22R.1, 23R.1, 24R.1, 26R.1, 27R.1, 28R.1.

    Article Snippet: The consensus sequences were subjected to analysis through the National Centre for Biotechnology Information nucleotide Basic Local Alignment Search Tool software program [ ].

    Techniques: Generated, Amplification, Sequencing, Labeling