blast extend repraze (SourceForge net)
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Blast Extend Repraze, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/basic+local+alignment+search+tool+software+program/blast+extend+repraze+ber/pmc04424289-23-6-10
Average 90 stars, based on 1 article reviews
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Sequencing:Article Title: Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing Article Snippet: Protein comparison and pairwise alignment For this step, the Article Title: Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis Article Snippet: Because our genome sequence data were produced using the 454 pyrosequencing technology, which tends to produce insertion/deletion (indel) nucleotide polymorphism in homopolymer stretches, protein-coding genes were further analyzed to identify putative frameshift mutations using BLAST Extend-Repraze ( http://ber.sourceforge.net/ ). Article Title: Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of Streptococcus pneumoniae and Comparison with That of Unencapsulated Laboratory Strain R6 Article Snippet: Article Title: CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0 Article Snippet: Protein comparison and pairwise alignment For this step, the Article Title: Genome Sequences and Characterization of the Related Gordonia Phages GTE5 and GRU1 and Their Use as Potential Biocontrol Agents Article Snippet: The BLAST X results were used as input for the Produced:Article Title: Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing Article Snippet: Protein comparison and pairwise alignment For this step, the Article Title: Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis Article Snippet: Because our genome sequence data were produced using the 454 pyrosequencing technology, which tends to produce insertion/deletion (indel) nucleotide polymorphism in homopolymer stretches, protein-coding genes were further analyzed to identify putative frameshift mutations using BLAST Extend-Repraze ( http://ber.sourceforge.net/ ). Article Title: Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of Streptococcus pneumoniae and Comparison with That of Unencapsulated Laboratory Strain R6 Article Snippet: Article Title: CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0 Article Snippet: Protein comparison and pairwise alignment For this step, the Article Title: Genome Sequences and Characterization of the Related Gordonia Phages GTE5 and GRU1 and Their Use as Potential Biocontrol Agents Article Snippet: The BLAST X results were used as input for the Comparison:Article Title: Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing Article Snippet: Protein comparison and pairwise alignment For this step, the Article Title: Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis Article Snippet: Because our genome sequence data were produced using the 454 pyrosequencing technology, which tends to produce insertion/deletion (indel) nucleotide polymorphism in homopolymer stretches, protein-coding genes were further analyzed to identify putative frameshift mutations using BLAST Extend-Repraze ( http://ber.sourceforge.net/ ). Article Title: Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of Streptococcus pneumoniae and Comparison with That of Unencapsulated Laboratory Strain R6 Article Snippet: Article Title: CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0 Article Snippet: Protein comparison and pairwise alignment For this step, the Article Title: Genome Sequences and Characterization of the Related Gordonia Phages GTE5 and GRU1 and Their Use as Potential Biocontrol Agents Article Snippet: The BLAST X results were used as input for the Modification:Article Title: Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing Article Snippet: Protein comparison and pairwise alignment For this step, the Article Title: Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis Article Snippet: Because our genome sequence data were produced using the 454 pyrosequencing technology, which tends to produce insertion/deletion (indel) nucleotide polymorphism in homopolymer stretches, protein-coding genes were further analyzed to identify putative frameshift mutations using BLAST Extend-Repraze ( http://ber.sourceforge.net/ ). Article Title: Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of Streptococcus pneumoniae and Comparison with That of Unencapsulated Laboratory Strain R6 Article Snippet: Article Title: CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0 Article Snippet: Protein comparison and pairwise alignment For this step, the Article Title: Genome Sequences and Characterization of the Related Gordonia Phages GTE5 and GRU1 and Their Use as Potential Biocontrol Agents Article Snippet: The BLAST X results were used as input for the |
