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Parse Biosciences evercode wt mega v2 barcoding plates
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
Evercode Wt Mega V2 Barcoding Plates, supplied by Parse Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/barcoding+plate/evercodetm+mega+v2+wt/pmc13069871-22-0-7
Average 86 stars, based on 1 article reviews
evercode wt mega v2 barcoding plates - by Bioz Stars, 2026-10
86/100 stars

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1) Product Images from "Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation"

Article Title: Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

Journal: Cell Genomics

doi: 10.1016/j.xgen.2025.101108

Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample barcoding plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
Figure Legend Snippet: Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample barcoding plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).

Techniques Used: Derivative Assay, Expressing

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Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Nuclei Extraction Buffer Miltenyi Biotec Cat# 130-128-024 gentleMACS C Tube Miltenyi Biotec Cat# 130-093-237 gentleMACS Octo Dissociator Miltenyi Biotec Cat# 130-095-937 MACS SmartStrainer, 70 uM Miltenyi Biotec Cat# 130-110-916 MACS SmartStrainer, 30 uM Miltenyi Biotec Cat# 130-110-915 RNase Inhibitor NEB Cat# M0314L 1x PBS Hyclone Cat# SH30256.02 7.5% BSA Life Technologies Cat# 15260037 AMPure XP beads Beckman Coulter Cat# A63881 Debris Removal Solution Miltenyi Biotec Cat# 130-109-398 PhiX Sequencing Control v3 Illumina Cat # 15017666 Critical commercial assays Evercode Nuclei Fixation Kit v2 Parse Biosciences Cat# NF100 Evercode WT Mega v2 cDNA Amplification Parse Biosciences Cat# RC100 Evercode WT Mega v2 Barcoding Reagents Parse Biosciences Cat# RB100 Evercode WT Mega v2 Fragmentation Reagents Parse Biosciences Cat# RX200 Evercode WT Mega v2 Accessories Parse Biosciences Cat# WA100 Evercode WT Mega v2 4C Reagents Parse Biosciences Cat# RA200 Evercode WT Mega v2 Barcoding Plates Parse Biosciences Cat# RP100 High-Sensitivity DNA Kit Agilent Cat# 5067-4626 NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles) Illumina Cat #20028312 Deposited data Mouse reference genome NCBI build 39, GRCm39 Genome Reference Consortium https://www.ncbi.nlm.nih.gov/datasets/ genome/GCF_000001635.27/ SNP and indel variation catalog of 52 inbred mouse strains Keane et al., 2011 46 ENA: PRJEB53906; https://www. mousegenomes.org/ Merged and processed adrenal gland data for founder strains across all plates This paper IGVFDS8997QHCM Merged and processed cortex/ hippocampus data for founder strains across all plates This paper IGVFDS2950ZMLN Merged and processed diencephalon/ pituitary data for founder strains across all plates This paper IGVFDS1666GZSV Merged and processed gastrocnemius data for founder strains across all plates This paper IGVFDS9423ZPAY Merged and processed female gonads data for founder strains across all plates This paper IGVFDS5397SEOD Merged and processed male gonads data for founder strains across all plates This paper IGVFDS0751LIZC Merged and processed heart data for founder strains across all plates This paper IGVFDS0868APKJ Merged and processed kidney data for founder strains across all plates This paper IGVFDS2656JJBV (Continued on next page) e1 Cell Genomics 6, 101108, April 8, 2026 OPEN ACCESS ..

Extraction:

Article Title: Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Nuclei Extraction Buffer Miltenyi Biotec Cat# 130-128-024 gentleMACS C Tube Miltenyi Biotec Cat# 130-093-237 gentleMACS Octo Dissociator Miltenyi Biotec Cat# 130-095-937 MACS SmartStrainer, 70 uM Miltenyi Biotec Cat# 130-110-916 MACS SmartStrainer, 30 uM Miltenyi Biotec Cat# 130-110-915 RNase Inhibitor NEB Cat# M0314L 1x PBS Hyclone Cat# SH30256.02 7.5% BSA Life Technologies Cat# 15260037 AMPure XP beads Beckman Coulter Cat# A63881 Debris Removal Solution Miltenyi Biotec Cat# 130-109-398 PhiX Sequencing Control v3 Illumina Cat # 15017666 Critical commercial assays Evercode Nuclei Fixation Kit v2 Parse Biosciences Cat# NF100 Evercode WT Mega v2 cDNA Amplification Parse Biosciences Cat# RC100 Evercode WT Mega v2 Barcoding Reagents Parse Biosciences Cat# RB100 Evercode WT Mega v2 Fragmentation Reagents Parse Biosciences Cat# RX200 Evercode WT Mega v2 Accessories Parse Biosciences Cat# WA100 Evercode WT Mega v2 4C Reagents Parse Biosciences Cat# RA200 Evercode WT Mega v2 Barcoding Plates Parse Biosciences Cat# RP100 High-Sensitivity DNA Kit Agilent Cat# 5067-4626 NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles) Illumina Cat #20028312 Deposited data Mouse reference genome NCBI build 39, GRCm39 Genome Reference Consortium https://www.ncbi.nlm.nih.gov/datasets/ genome/GCF_000001635.27/ SNP and indel variation catalog of 52 inbred mouse strains Keane et al., 2011 46 ENA: PRJEB53906; https://www. mousegenomes.org/ Merged and processed adrenal gland data for founder strains across all plates This paper IGVFDS8997QHCM Merged and processed cortex/ hippocampus data for founder strains across all plates This paper IGVFDS2950ZMLN Merged and processed diencephalon/ pituitary data for founder strains across all plates This paper IGVFDS1666GZSV Merged and processed gastrocnemius data for founder strains across all plates This paper IGVFDS9423ZPAY Merged and processed female gonads data for founder strains across all plates This paper IGVFDS5397SEOD Merged and processed male gonads data for founder strains across all plates This paper IGVFDS0751LIZC Merged and processed heart data for founder strains across all plates This paper IGVFDS0868APKJ Merged and processed kidney data for founder strains across all plates This paper IGVFDS2656JJBV (Continued on next page) e1 Cell Genomics 6, 101108, April 8, 2026 OPEN ACCESS ..

Magnetic Cell Separation:

Article Title: Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Nuclei Extraction Buffer Miltenyi Biotec Cat# 130-128-024 gentleMACS C Tube Miltenyi Biotec Cat# 130-093-237 gentleMACS Octo Dissociator Miltenyi Biotec Cat# 130-095-937 MACS SmartStrainer, 70 uM Miltenyi Biotec Cat# 130-110-916 MACS SmartStrainer, 30 uM Miltenyi Biotec Cat# 130-110-915 RNase Inhibitor NEB Cat# M0314L 1x PBS Hyclone Cat# SH30256.02 7.5% BSA Life Technologies Cat# 15260037 AMPure XP beads Beckman Coulter Cat# A63881 Debris Removal Solution Miltenyi Biotec Cat# 130-109-398 PhiX Sequencing Control v3 Illumina Cat # 15017666 Critical commercial assays Evercode Nuclei Fixation Kit v2 Parse Biosciences Cat# NF100 Evercode WT Mega v2 cDNA Amplification Parse Biosciences Cat# RC100 Evercode WT Mega v2 Barcoding Reagents Parse Biosciences Cat# RB100 Evercode WT Mega v2 Fragmentation Reagents Parse Biosciences Cat# RX200 Evercode WT Mega v2 Accessories Parse Biosciences Cat# WA100 Evercode WT Mega v2 4C Reagents Parse Biosciences Cat# RA200 Evercode WT Mega v2 Barcoding Plates Parse Biosciences Cat# RP100 High-Sensitivity DNA Kit Agilent Cat# 5067-4626 NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles) Illumina Cat #20028312 Deposited data Mouse reference genome NCBI build 39, GRCm39 Genome Reference Consortium https://www.ncbi.nlm.nih.gov/datasets/ genome/GCF_000001635.27/ SNP and indel variation catalog of 52 inbred mouse strains Keane et al., 2011 46 ENA: PRJEB53906; https://www. mousegenomes.org/ Merged and processed adrenal gland data for founder strains across all plates This paper IGVFDS8997QHCM Merged and processed cortex/ hippocampus data for founder strains across all plates This paper IGVFDS2950ZMLN Merged and processed diencephalon/ pituitary data for founder strains across all plates This paper IGVFDS1666GZSV Merged and processed gastrocnemius data for founder strains across all plates This paper IGVFDS9423ZPAY Merged and processed female gonads data for founder strains across all plates This paper IGVFDS5397SEOD Merged and processed male gonads data for founder strains across all plates This paper IGVFDS0751LIZC Merged and processed heart data for founder strains across all plates This paper IGVFDS0868APKJ Merged and processed kidney data for founder strains across all plates This paper IGVFDS2656JJBV (Continued on next page) e1 Cell Genomics 6, 101108, April 8, 2026 OPEN ACCESS ..

Sequencing:

Article Title: Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Nuclei Extraction Buffer Miltenyi Biotec Cat# 130-128-024 gentleMACS C Tube Miltenyi Biotec Cat# 130-093-237 gentleMACS Octo Dissociator Miltenyi Biotec Cat# 130-095-937 MACS SmartStrainer, 70 uM Miltenyi Biotec Cat# 130-110-916 MACS SmartStrainer, 30 uM Miltenyi Biotec Cat# 130-110-915 RNase Inhibitor NEB Cat# M0314L 1x PBS Hyclone Cat# SH30256.02 7.5% BSA Life Technologies Cat# 15260037 AMPure XP beads Beckman Coulter Cat# A63881 Debris Removal Solution Miltenyi Biotec Cat# 130-109-398 PhiX Sequencing Control v3 Illumina Cat # 15017666 Critical commercial assays Evercode Nuclei Fixation Kit v2 Parse Biosciences Cat# NF100 Evercode WT Mega v2 cDNA Amplification Parse Biosciences Cat# RC100 Evercode WT Mega v2 Barcoding Reagents Parse Biosciences Cat# RB100 Evercode WT Mega v2 Fragmentation Reagents Parse Biosciences Cat# RX200 Evercode WT Mega v2 Accessories Parse Biosciences Cat# WA100 Evercode WT Mega v2 4C Reagents Parse Biosciences Cat# RA200 Evercode WT Mega v2 Barcoding Plates Parse Biosciences Cat# RP100 High-Sensitivity DNA Kit Agilent Cat# 5067-4626 NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles) Illumina Cat #20028312 Deposited data Mouse reference genome NCBI build 39, GRCm39 Genome Reference Consortium https://www.ncbi.nlm.nih.gov/datasets/ genome/GCF_000001635.27/ SNP and indel variation catalog of 52 inbred mouse strains Keane et al., 2011 46 ENA: PRJEB53906; https://www. mousegenomes.org/ Merged and processed adrenal gland data for founder strains across all plates This paper IGVFDS8997QHCM Merged and processed cortex/ hippocampus data for founder strains across all plates This paper IGVFDS2950ZMLN Merged and processed diencephalon/ pituitary data for founder strains across all plates This paper IGVFDS1666GZSV Merged and processed gastrocnemius data for founder strains across all plates This paper IGVFDS9423ZPAY Merged and processed female gonads data for founder strains across all plates This paper IGVFDS5397SEOD Merged and processed male gonads data for founder strains across all plates This paper IGVFDS0751LIZC Merged and processed heart data for founder strains across all plates This paper IGVFDS0868APKJ Merged and processed kidney data for founder strains across all plates This paper IGVFDS2656JJBV (Continued on next page) e1 Cell Genomics 6, 101108, April 8, 2026 OPEN ACCESS ..

Article Title: Transcriptomic study of WSSV infection in Litopenaeus vannamei lymphoid organ via single nuclei RNA sequencing.
Article Snippet: .. Once all the nuclei had been processed, the samples were prepared for sequencing using the EvercodeTM WT Mega v2 from Parse Biosciences according to manufacturer’s instructions. ..

Control:

Article Title: Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Nuclei Extraction Buffer Miltenyi Biotec Cat# 130-128-024 gentleMACS C Tube Miltenyi Biotec Cat# 130-093-237 gentleMACS Octo Dissociator Miltenyi Biotec Cat# 130-095-937 MACS SmartStrainer, 70 uM Miltenyi Biotec Cat# 130-110-916 MACS SmartStrainer, 30 uM Miltenyi Biotec Cat# 130-110-915 RNase Inhibitor NEB Cat# M0314L 1x PBS Hyclone Cat# SH30256.02 7.5% BSA Life Technologies Cat# 15260037 AMPure XP beads Beckman Coulter Cat# A63881 Debris Removal Solution Miltenyi Biotec Cat# 130-109-398 PhiX Sequencing Control v3 Illumina Cat # 15017666 Critical commercial assays Evercode Nuclei Fixation Kit v2 Parse Biosciences Cat# NF100 Evercode WT Mega v2 cDNA Amplification Parse Biosciences Cat# RC100 Evercode WT Mega v2 Barcoding Reagents Parse Biosciences Cat# RB100 Evercode WT Mega v2 Fragmentation Reagents Parse Biosciences Cat# RX200 Evercode WT Mega v2 Accessories Parse Biosciences Cat# WA100 Evercode WT Mega v2 4C Reagents Parse Biosciences Cat# RA200 Evercode WT Mega v2 Barcoding Plates Parse Biosciences Cat# RP100 High-Sensitivity DNA Kit Agilent Cat# 5067-4626 NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles) Illumina Cat #20028312 Deposited data Mouse reference genome NCBI build 39, GRCm39 Genome Reference Consortium https://www.ncbi.nlm.nih.gov/datasets/ genome/GCF_000001635.27/ SNP and indel variation catalog of 52 inbred mouse strains Keane et al., 2011 46 ENA: PRJEB53906; https://www. mousegenomes.org/ Merged and processed adrenal gland data for founder strains across all plates This paper IGVFDS8997QHCM Merged and processed cortex/ hippocampus data for founder strains across all plates This paper IGVFDS2950ZMLN Merged and processed diencephalon/ pituitary data for founder strains across all plates This paper IGVFDS1666GZSV Merged and processed gastrocnemius data for founder strains across all plates This paper IGVFDS9423ZPAY Merged and processed female gonads data for founder strains across all plates This paper IGVFDS5397SEOD Merged and processed male gonads data for founder strains across all plates This paper IGVFDS0751LIZC Merged and processed heart data for founder strains across all plates This paper IGVFDS0868APKJ Merged and processed kidney data for founder strains across all plates This paper IGVFDS2656JJBV (Continued on next page) e1 Cell Genomics 6, 101108, April 8, 2026 OPEN ACCESS ..

Amplification:

Article Title: Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Nuclei Extraction Buffer Miltenyi Biotec Cat# 130-128-024 gentleMACS C Tube Miltenyi Biotec Cat# 130-093-237 gentleMACS Octo Dissociator Miltenyi Biotec Cat# 130-095-937 MACS SmartStrainer, 70 uM Miltenyi Biotec Cat# 130-110-916 MACS SmartStrainer, 30 uM Miltenyi Biotec Cat# 130-110-915 RNase Inhibitor NEB Cat# M0314L 1x PBS Hyclone Cat# SH30256.02 7.5% BSA Life Technologies Cat# 15260037 AMPure XP beads Beckman Coulter Cat# A63881 Debris Removal Solution Miltenyi Biotec Cat# 130-109-398 PhiX Sequencing Control v3 Illumina Cat # 15017666 Critical commercial assays Evercode Nuclei Fixation Kit v2 Parse Biosciences Cat# NF100 Evercode WT Mega v2 cDNA Amplification Parse Biosciences Cat# RC100 Evercode WT Mega v2 Barcoding Reagents Parse Biosciences Cat# RB100 Evercode WT Mega v2 Fragmentation Reagents Parse Biosciences Cat# RX200 Evercode WT Mega v2 Accessories Parse Biosciences Cat# WA100 Evercode WT Mega v2 4C Reagents Parse Biosciences Cat# RA200 Evercode WT Mega v2 Barcoding Plates Parse Biosciences Cat# RP100 High-Sensitivity DNA Kit Agilent Cat# 5067-4626 NovaSeq 6000 S4 Reagent Kit v1.5 (300 cycles) Illumina Cat #20028312 Deposited data Mouse reference genome NCBI build 39, GRCm39 Genome Reference Consortium https://www.ncbi.nlm.nih.gov/datasets/ genome/GCF_000001635.27/ SNP and indel variation catalog of 52 inbred mouse strains Keane et al., 2011 46 ENA: PRJEB53906; https://www. mousegenomes.org/ Merged and processed adrenal gland data for founder strains across all plates This paper IGVFDS8997QHCM Merged and processed cortex/ hippocampus data for founder strains across all plates This paper IGVFDS2950ZMLN Merged and processed diencephalon/ pituitary data for founder strains across all plates This paper IGVFDS1666GZSV Merged and processed gastrocnemius data for founder strains across all plates This paper IGVFDS9423ZPAY Merged and processed female gonads data for founder strains across all plates This paper IGVFDS5397SEOD Merged and processed male gonads data for founder strains across all plates This paper IGVFDS0751LIZC Merged and processed heart data for founder strains across all plates This paper IGVFDS0868APKJ Merged and processed kidney data for founder strains across all plates This paper IGVFDS2656JJBV (Continued on next page) e1 Cell Genomics 6, 101108, April 8, 2026 OPEN ACCESS ..

Expressing:

Article Title: Improving SCVI for low-count cells through self-supervised augmentation
Article Snippet: .. 39,827 cells from mouse hindlimb knee joints measuring expression of 30,266 genes using Parse Biosciences Ever-code WT Mega v1 kit. ..



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Greiner Bio barcoded 384 well imaging plates
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
Barcoded 384 Well Imaging Plates, supplied by Greiner Bio, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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barcoded 384 well imaging plates - by Bioz Stars, 2026-10
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10X Genomics 384 well plate first barcoding 10x genomics
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
384 Well Plate First Barcoding 10x Genomics, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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384 well plate first barcoding 10x genomics - by Bioz Stars, 2026-10
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10X Genomics well plate barcoding 10x genomics
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
Well Plate Barcoding 10x Genomics, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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well plate barcoding 10x genomics - by Bioz Stars, 2026-10
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Pacific Biosciences barcoded universal f r primers plate 96
Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample <t>barcoding</t> plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).
Barcoded Universal F R Primers Plate 96, supplied by Pacific Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample barcoding plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).

Journal: Cell Genomics

Article Title: Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

doi: 10.1016/j.xgen.2025.101108

Figure Lengend Snippet: Overview of the IGVF mouse dataset in eight founder genotypes (A) Visual representation of the “8-cube” dataset across eight genotypes, eight tissues, and eight replicates. (B) Experimental design of sample barcoding plate. Nuclei derived from one tissue serves as the main tissue on the plate. Nuclei from a different tissue are multiplexed in the remaining third of the plate, where two samples from distinct genotypes are loaded into one well. See also , , ; and . (C) Tissue-loading pattern for all eight sample barcoding plates. (D) Pseudobulk PCA of 516 total samples colored by tissue and points indicating females (crosses) and males (circles). See for PCA per tissue. (E) Adjusted p values from two-sided ANOVA test between PCs and metadata (top heatmap); scores for the first nine PCs across samples (bottom heatmap). (F) Row-scaled expression of 20 protein-coding genotype-specific genes across pseudobulk samples grouped by tissue, genotype, and sex. See for full gene list. (G) Number of differentially expressed genes (DEGs) between each genotype and B6 ( n = 8 samples per group, gonads n = 4). Two-sided Wald test, Benjamini-Hochberg adjusted p value <0.01 and absolute log fold change (LFC) >1; see also ). (H) Percentage of nuclei falling into genotype-specific subclusters across tissues (see also ).

Article Snippet: Evercode WT Mega v2 Barcoding Plates , Parse Biosciences , Cat# RP100.

Techniques: Derivative Assay, Expressing