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    ATCC arrayexpress e mtab 15636 experimental models
    Arrayexpress E Mtab 15636 Experimental Models, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 18 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/arrayexpress/Fusarium+oxysporum+f%2E+sp%2E+apii+(Nelson+et+Sherbakoff)+Snyder+et+Hansen/pm41379613-619-143-150
    Average 94 stars, based on 18 article reviews
    arrayexpress e mtab 15636 experimental models - by Bioz Stars, 2026-10
    94/100 stars

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    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Staining:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Gene Expression:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Multiple Displacement Amplification:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Sequencing:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Recombinant:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Cell Culture:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Negative Control:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Positive Control:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Expressing:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Bacteria:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Lysis:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Thin Layer Chromatography:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Quantitative RT-PCR:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Injection:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Suspension:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Infection:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Control:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Concentration Assay:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    In Vivo:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.

    Microscopy:

    Article Title: Cancer cells transfer invasive properties through microRNAs contained in collagen tracks.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FBS Eurobio Cat. # CVFSVF00-01 Horse serum Gibco Cat. # 16050122 DMEM high glucose, Glutamax Gibco Cat. # 10566016 DMEM-F12, Glutamax Gibco Cat. # 10565018 RPMI, Glutamax Gibco Cat. # 61870036 Penicillin-streptomycin Gibco Cat. # 15140122 Trypsin Gibco Cat. # 25300054 DPBS Gibco Cat. # 14190144 PBS Gibco Cat. # 10010023 OptiMEM Gibco Cat. # 11058021 Nucleospin RNA kit Macherey Nagel Cat. # 740955.50 Transwell chambers 8.0μm pore size Falcon Cat. # 353097 TGX Stain-Free TM FastCast TM Acrylamide Kit, 10% Bio-Rad Cat. # 1610183 Trans-Blot Turbo RTA Midi 0.2 μm Nitrocellulose Transfer Kit Bio-Rad Cat. # 1704271 4x Laemmli Sample Buffer Bio-Rad Cat. # 1610747 Deposited data Proteomic (collagen tracks) This paper https://www.ebi.ac.uk/pride/; ProteomeXchange: PXD035152 Bulk RNAseq (MCF-7) This paper https://www.ncbi.nlm.nih. gov/geo/; Gene Expression Omnibus: GSE308896 Bulk RNAseq (collagen tracks) This paper https://www.ebi.ac.uk/biostudies/ arrayexpress/studies; ArrayExpress: E-MTAB-15636 Experimental models: Cell lines MDA-MB-231 ATCC Cat. # HTB-26 MCF-7 ATCC Cat. # HTB-22 MCF-10A ATCC Cat. # CRL-10317 Oligonucleotides Si ARN control5’UGGUUUACAUGUCGACUAA-3’ Eurofins N/A Si ARN β1 integrin #15’- GAACAGAUCUGAUGAAUGA-3’ Eurofins N/A Si ARN β1 integrin #35’- GAAGGGAGUUUGCUAAAUU-3’ Eurofins N/A Si ARN β1 integrin #45’- CCACAGACAUUUACAUUAA-3’ Eurofins N/A Si ARN CD44 #15’- GUAUGACACAUAUGGCUU-3’ Eurofins N/A Si ARN CD44 #25’- GAAGCAAUAUGUGUCAUA-3’ Eurofins N/A miRCURY LNA miRNA Power Inhibitors Qiagen See STAR Methods details for identifiers Primers for VIM,SNAI1, SNAI2, ZEB1, CDH1, DDR1, MMP14, ITGB1, 18S Eurofins See STAR Methods details for primer sequence Recombinant DNA crDNA to deplete DDR15’TGGGAAACACCGACCCTGCGGGG-3’ This paper N/A (Continued on next page) 18 Cell Reports 44, 116725, December 23, 2025

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: 24249 strain=24249' 'Shigella boydii Sb227 strain=Sb227' 'Bacillus oceanisediminis 2691 strain=2691' 'Lactococcus lactis subsp. lactis strain=S0' 'Lachnoclostridium sp. YL32 strain=YL32' 'Lactobacillus brevis strain=NPS-QW-145' 'Lactobacillus helveticus R0052 strain=R0052' 'Streptococcus pyogenes NZ131 strain=NZ131 ATCC BAA-1633' 'Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 strain=ATCC 12394' 'Anoxybacillus flavithermus WK1 strain=WK1' 'Paenibacillus sp. FSL H7-0737 strain=FSL H7-0737' 'Neisseria meningitidis strain=NM3682' 'Lactobacillus mucosae LM1 strain=LM1' 'Escherichia coli strain=2009C-3133' 'Cedecea neteri strain=SSMD04' 'Streptomyces parvulus strain=2297' 'Hafnia alvei strain=HUMV-5920' 'Vibrio coralliilyticus' 'Burkholderia pseudomallei PB08298010 strain=PB08298010' 'Methylomonas sp. DH-1 strain=DH-1' 'Klebsiella pneumoniae strain=ED2' 'Vibrio vulnificus strain=FORC 017' 'Staphylococcus aureus subsp. aureus ED133 strain=ED133' 'Bordetella bronchiseptica MO149 strain=MO149' 'Kluyvera intermedia strain=CAV1151' 'Ralstonia pickettii 12J strain=12J' 'Paenibacillus sp. Y412MC10 strain=Y412MC10' 'Lactobacillus lindneri strain=TMW 1.1993' 'Burkholderia plantarii strain=ATCC 43733' 'Staphylococcus aureus strain=08-02300' 'Pantoea agglomerans strain=FDAARGOS 160' 'Pseudomonas putida S12 strain=S12' 'Streptococcus pyogenes M1 GAS strain=SF370' 'Haemophilus influenzae R2866 strain=R2866' 'Saccharomonospora viridis DSM 43017 strain=DSM 43017' 'Serratia sp. YD25 strain=YD25' 'Spiribacter sp. UAH-SP71 strain=UAH-SP71' 'Burkholderia pseudomallei MSHR840 strain=MSHR840' 'Pseudomonas sp. URMO17WK12I11' 'Bacillus licheniformis DSM 13 = ATCC 14580 strain=DSM 13' 'Geobacillus genomosp. 3 strain=JF8' 'Lelliottia amnigena strain=ZB04' 'Staphylococcus aureus strain=XQ' 'Burkholderia territorii strain=RF8-non-BP5' 'Enterococcus casseliflavus EC20 strain=EC20' 'Streptococcus thermophilus strain=SMQ-301' 'Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain=ATCC 14048' 'Burkholderia cenocepacia strain=MSMB384WGS' 'Streptococcus agalactiae strain=NGBS572' 'Pantoea ananatis AJ13355 strain=AJ13355' 'Escherichia coli strain=06-00048' 'Pseudomonas fluorescens strain=L228' 'Aggregatibacter actinomycetemcomitans strain=IDH781' 'Bacillus cereus ATCC 4342 strain=ATCC 4342' 'Heliobacterium modesticaldum Ice1 strain=Ice1 ATCC 51547' 'Pseudomonas monteilii strain=USDA-ARS-USMARC-56711' 'Pasteurella multocida subsp. multocida str.

    Article Title: Characterization of the genome and cell invasive phenotype of Vibrio diabolicus Cg5 isolated from mass mortality of Pacific oyster, Crassostrea gigas.
    Article Snippet: Vibrio is an important group of aquatic animal pathogens, which has been identified as the main pathogenic factor causing mass summer mortality of Crassostrea gigas in northern China.. This study aims to investigate the potential pathogenic mechanisms of Vibrio Cg5 isolate in C. gigas.. We sequenced and annotated the genome of Vibrio Cg5 to analyze potential virulence factors.

    Article Title: Evolution of the Natural Transformation Protein, ComEC, in Bacteria
    Article Snippet: syringae B301D strain=B301D' 'Streptococcus anginosus C238 strain=C238' 'Bdellovibrio bacteriovorus HD100 strain=HD100' 'Brucella suis strain=513UK' 'Aerococcus urinaeequi strain=USDA-ARS-USMARC-56713' 'Pectobacterium carotovorum subsp. carotovorum PC1 strain=PC1' 'Serratia marcescens strain=SmUNAM836' 'Polaromonas naphthalenivorans CJ2 strain=CJ2' 'Pseudomonas syringae CC1557 strain=CC1557' 'Staphylococcus aureus subsp. aureus COL strain=COL' 'Candidatus Liberibacter americanus str.



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