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visium spatial transcriptomics  (Spatial Transcriptomics Inc)

 
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    Spatial Transcriptomics Inc visium spatial transcriptomics
    Visium Spatial Transcriptomics, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/array-based+spatial+transcriptomics+visium+10x/visium+spatial+transcriptomics/pm37393865-533-29-30
    Average 90 stars, based on 1 article reviews
    visium spatial transcriptomics - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    other:

    Article Title: Erbin interacts with NHERF1 and Ezrin to stabilize a membrane ErbB2 signaling complex in HER2-positive breast cancer.
    Article Snippet: We also examined the spatial correlation between the expression of ERBB2, SLC9A3R, and EZR in breast cancer cells, using a spatial transcriptomics (visium) database of human breast cancer [30].

    Article Title: The role of UBR2 in triple-negative breast cancer and its implications for immune checkpoint blockade therapy
    Article Snippet: This dual-model system enables mechanistic exploration of UBR2: (1) Regulation of PD-L1 via immunoblotting and flow cytometry. (2) Immunosuppressive microenvironment modulation through cytokine profiling (Luminex) and spatial transcriptomics (Visium).

    Spatial Transcriptomics:

    Article Title: Cell states and neighborhoods in distinct clinical stages of primary and metastatic esophageal adenocarcinoma
    Article Snippet: Processed single-nuclei ATAC-seq data , This paper , Single-cell portal: SCP3029. .. Raw and processed spatial transcriptomics Visium data , This paper , Zenodo: 10.5281/zenodo.15341263. .. Raw and processed spatial transcriptomics Xenium data , This paper , Zenodo: 10.5281/zenodo.15341263.

    Article Title: Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process.
    Article Snippet: .. Spatial transcriptomics has advanced our ability to probe intercellular communication within the bone healingmicroenvironment, shedding light on the complex interplay that orchestrates the healingprocess.Although the resolution of currently employed spatial transcriptomic platforms such as Visium is not sufficient to detail communications between individual cells within each spot—which can contain 2–10 cells of potentially different types —the integration of computational deconvolution methods such as CARD has enabled us to infer probable cell types within these spots. ..

    Article Title: Integrating bulk and single-cell RNA sequencing reveals intratumor heterogeneity phenotypes and immune infiltration in pancreatic cancer.
    Article Snippet: .. Quan Y, Zhang H, Wang M, Ping H. Visium Spatial transcriptomics reveals intratumor heterogeneity and profiles of Gleason score progression in prostate cancer. iScience. ..

    Article Title: Spatial transcriptomics reveal PI3K-AKT and metabolic alterations in aggressive, treatment-resistant lactotroph pituitary neuroendocrine tumors.
    Article Snippet: .. Visium Spatial Transcriptomics (ST), whole transcriptome sequencing (WTS), and whole exome sequencing (WES) were performed in tumors from 4 of these patients; WTS and WES was carried out in 5; tumors from two patients underwent ST and WES and tumors from two other patients underwent only ST. One of the patients presented to the ear, nose and throat department with a mass in the sphenoid sinus, which was biopsied and turned out to be a PRL-secreting lesion documented by MRI, so she was treated with cabergoline. ..

    Gene Expression:

    Article Title: Current cutting-edge omics techniques on musculoskeletal tissues and diseases.
    Article Snippet: .. By localizing gene expression within the three-dimensional architecture of bone tissues, the study provided unparalleled insights into spatial genetic changes during fracture repair.188 Using the Visium CytAssist spatial transcriptomics platform, researchers successfully mapped genes associated with hard callus (e.g., Dmp1 and Sost) and soft callus (e.g., Acan and Col2a1) while preserving the spatial integrity of the tissue. ..

    Preserving:

    Article Title: Current cutting-edge omics techniques on musculoskeletal tissues and diseases.
    Article Snippet: .. By localizing gene expression within the three-dimensional architecture of bone tissues, the study provided unparalleled insights into spatial genetic changes during fracture repair.188 Using the Visium CytAssist spatial transcriptomics platform, researchers successfully mapped genes associated with hard callus (e.g., Dmp1 and Sost) and soft callus (e.g., Acan and Col2a1) while preserving the spatial integrity of the tissue. ..

    Article Title: Current cutting-edge omics techniques on musculoskeletal tissues and diseases
    Article Snippet: .. Using the Visium CytAssist spatial transcriptomics platform, researchers successfully mapped genes associated with hard callus (e.g., Dmp1 and Sost ) and soft callus (e.g., Acan and Col2a1 ) while preserving the spatial integrity of the tissue. ..

    Sequencing:

    Article Title: Spatial transcriptomics reveal PI3K-AKT and metabolic alterations in aggressive, treatment-resistant lactotroph pituitary neuroendocrine tumors.
    Article Snippet: .. Visium Spatial Transcriptomics (ST), whole transcriptome sequencing (WTS), and whole exome sequencing (WES) were performed in tumors from 4 of these patients; WTS and WES was carried out in 5; tumors from two patients underwent ST and WES and tumors from two other patients underwent only ST. One of the patients presented to the ear, nose and throat department with a mass in the sphenoid sinus, which was biopsied and turned out to be a PRL-secreting lesion documented by MRI, so she was treated with cabergoline. ..

    Magnetic Resonance Imaging:

    Article Title: Spatial transcriptomics reveal PI3K-AKT and metabolic alterations in aggressive, treatment-resistant lactotroph pituitary neuroendocrine tumors.
    Article Snippet: .. Visium Spatial Transcriptomics (ST), whole transcriptome sequencing (WTS), and whole exome sequencing (WES) were performed in tumors from 4 of these patients; WTS and WES was carried out in 5; tumors from two patients underwent ST and WES and tumors from two other patients underwent only ST. One of the patients presented to the ear, nose and throat department with a mass in the sphenoid sinus, which was biopsied and turned out to be a PRL-secreting lesion documented by MRI, so she was treated with cabergoline. ..



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