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assembly and annotation of the chinese chive transcriptome  (Illumina Inc)


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    Illumina Inc assembly and annotation of the chinese chive transcriptome
    Assembly And Annotation Of The Chinese Chive Transcriptome, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/annotated+transcriptome+assembly/transcriptome+assembly/pm40122824-381-7-17
    Average 90 stars, based on 1 article reviews
    assembly and annotation of the chinese chive transcriptome - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Characterization of stilbene synthase genes by comparative genome sequencing of Vitis flexuosa with high contents of stilbene compounds to Vitis vinifera genome
    Article Snippet: Grapevine is an economically important fruit crop with high secondary metabolite content.. The stilbene contents in ripe berries were significantly higher in Vitis flexuosa than in ‘Pinot Noir’ (V. vinifera) and ‘Campbell Early’ (V. labruscana).. A phylogenetic tree analysis of STS family showed high similarity between V. flexuosa and V. vinifera.

    Article Title: De novo transcriptome assemblies of C 3 and C 4 non-model grass species reveal key differences in leaf development.
    Article Snippet: .. Availability of data and materials The Illumina RNA-Seq reads and transcriptomes assembly supporting the conclusions of this article are available from the NCBI Sequence Read Archive (PRJNA813546, https:// datav iew. ncbi. nlm. nih. gov/ object/ PRJNA 813546? revie wer= 6vmhg dsbso bv6pd 6u6tr 9rp4oe). ..

    Article Title: Nutrient Deficiencies Impact on the Cellular and Metabolic Responses of Saxitoxin Producing Alexandrium minutum : A Transcriptomic Perspective.
    Article Snippet: .. Data Availability Statement: The raw read sequences of transcriptome assembly obtained from Illumina Hiseq4000 (150PE) platform have been deposited in Sequence Read Archive (SRA) under the BioProject id: PRJNA914202. ..

    Article Title: Artificial Light for Improving Tomato Recovery Following Grafting: Transcriptome and Physiological Analyses.
    Article Snippet: .. Transcriptome Sequencing and Assembly Transcriptome sequencing was performed on the lighting- and shading-treated leaves using the Illumina high-throughput platform. ..

    Article Title: Nutrient Deficiencies Impact on the Cellular and Metabolic Responses of Saxitoxin Producing Alexandrium minutum : A Transcriptomic Perspective
    Article Snippet: .. The raw read sequences of transcriptome assembly obtained from Illumina Hiseq4000 (150PE) platform have been deposited in Sequence Read Archive (SRA) under the BioProject id: PRJNA914202. ..

    RNA sequencing:

    Article Title: De novo transcriptome assemblies of C 3 and C 4 non-model grass species reveal key differences in leaf development.
    Article Snippet: .. Availability of data and materials The Illumina RNA-Seq reads and transcriptomes assembly supporting the conclusions of this article are available from the NCBI Sequence Read Archive (PRJNA813546, https:// datav iew. ncbi. nlm. nih. gov/ object/ PRJNA 813546? revie wer= 6vmhg dsbso bv6pd 6u6tr 9rp4oe). ..

    other:

    Article Title: De novo assembly of transcriptomes and differential gene expression analysis using short-read data from emerging model organisms – a brief guide
    Article Snippet: The upper box summarizes applications provided by all methods outlined in Ai-iii. (Ai) Chromosome-level genome with high-quality gene annotation. (Aii) Transcriptome assembly based on long reads (e.g. PacBio Iso-Seq). (Aiii) Transcriptome assembly based on short reads (Illumina, 100–250 bp).

    Article Title: Integrated metabolomics and transcriptomics analysis reveals the potential mechanism by which Methyl jasmonate enhances the pungent flavor of soilless-cultivated Chinese chives (Allium tuberosum).
    Article Snippet: De Novo assembly and annotation of the Chinese Chive (Allium tuberosum rottler ex Spr.) transcriptome using the illumina platform.

    Next-Generation Sequencing:

    Article Title: Transcriptome sequencing of sesame (Sesamum indicum) using Illumina Platform
    Article Snippet: .. The next generation sequencing run for whole transcriptome assembly was achieved through Illumina MiSeq. ..



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    Global overview of the Pyropia haitanensis <t>transcriptome</t> under different light irradiance conditions. ( A ) Principal component analysis (PCA); ( B ) Venn diagram analysis; ( C ) number of differentially expressed genes. LIS-CK vs. LIS-LI1d, comparison between the control sample of LIS strain and the sample exposed to low irradiance for 1 day; LIS-CK vs. LIS-LI4d, comparison between the control sample of LIS strain and the sample exposed to low irradiance for 4 days; LIT-CK vs. LIT-LI1d, comparison between the control sample of LIT strain and the sample exposed to low irradiance for 1 day; LIT-CK vs. LIT-LI4d, comparison between the control sample of LIT strain and the sample exposed to low irradiance for 4 days. LIT, low irradiance-tolerant strain; LIS, low irradiance-sensitive strain. UP, up-regulated genes; DOWN, down-regulated genes.
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    Global overview of the Pyropia haitanensis transcriptome under different light irradiance conditions. ( A ) Principal component analysis (PCA); ( B ) Venn diagram analysis; ( C ) number of differentially expressed genes. LIS-CK vs. LIS-LI1d, comparison between the control sample of LIS strain and the sample exposed to low irradiance for 1 day; LIS-CK vs. LIS-LI4d, comparison between the control sample of LIS strain and the sample exposed to low irradiance for 4 days; LIT-CK vs. LIT-LI1d, comparison between the control sample of LIT strain and the sample exposed to low irradiance for 1 day; LIT-CK vs. LIT-LI4d, comparison between the control sample of LIT strain and the sample exposed to low irradiance for 4 days. LIT, low irradiance-tolerant strain; LIS, low irradiance-sensitive strain. UP, up-regulated genes; DOWN, down-regulated genes.

    Journal: Life

    Article Title: Investigating the Mechanisms Underlying the Low Irradiance-Tolerance of the Economically Important Seaweed Species Pyropia haitanensis

    doi: 10.3390/life13020481

    Figure Lengend Snippet: Global overview of the Pyropia haitanensis transcriptome under different light irradiance conditions. ( A ) Principal component analysis (PCA); ( B ) Venn diagram analysis; ( C ) number of differentially expressed genes. LIS-CK vs. LIS-LI1d, comparison between the control sample of LIS strain and the sample exposed to low irradiance for 1 day; LIS-CK vs. LIS-LI4d, comparison between the control sample of LIS strain and the sample exposed to low irradiance for 4 days; LIT-CK vs. LIT-LI1d, comparison between the control sample of LIT strain and the sample exposed to low irradiance for 1 day; LIT-CK vs. LIT-LI4d, comparison between the control sample of LIT strain and the sample exposed to low irradiance for 4 days. LIT, low irradiance-tolerant strain; LIS, low irradiance-sensitive strain. UP, up-regulated genes; DOWN, down-regulated genes.

    Article Snippet: De novo transcriptome assembly and annotation (as described by Illumina) were completed by Gene Denovo Biotechnology Co., Ltd. (Guangzhou, China).

    Techniques: Comparison, Control