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Comeau Technique docking algorithms cluspro
Table 2
Docking Algorithms Cluspro, supplied by Comeau Technique, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/algorithms+cluspro/docking+program/pmc05444293-263-3-26
Average 90 stars, based on 1 article reviews
docking algorithms cluspro - by Bioz Stars, 2026-09
90/100 stars

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1) Product Images from "ProtLID, a residue-based pharmacophore approach to identify cognate protein ligands in the Immunoglobulin Superfamily"

Article Title: ProtLID, a residue-based pharmacophore approach to identify cognate protein ligands in the Immunoglobulin Superfamily

Journal: Structure (London, England : 1993)

doi: 10.1016/j.str.2016.10.012

Table 2
Figure Legend Snippet: Table 2

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Article Title: HDAC inhibitors show differential epigenetic regulation and cell survival strategies on p53 mutant colon cancer cells.
Article Snippet: Besides inactivating tumour suppressor activity in cells, mutations in p53 confer significant oncogenic functions and promote metastasis and resistance to anti cancer therapy.. A variety of therapies involving genetic and epigenetic signalling events regulate tumorogenesis and progression in such cases.. Pharmacological interventions with HDAC inhibitors have shown promise in therapy.

Article Title: MutDock: A computational docking approach for fixed-backbone protein scaffold design.
Article Snippet: One strategy is to use a docking program (Chen et al., 2003; Dominguez et al., 2003; Comeau et al., 2004; Lyskov and Gray, 2008; Torchala et al., 2013) to create an initial complex followed by iterative cycles of point mutations (Pantazes et al., 2015; Adolf-Bryfogle et al., 2018; Nimrod et al., 2018).

Article Title: Interaction of 2A proteinase of human rhinovirus genetic group A with eIF4E is required for eIF4G cleavage during infection.
Article Snippet: We then used the ClusPro protein-protein docking service (Comeau et al., 2004a, 2004b; Kozakov et al., 2013) to provide information on the interaction of eIF4E with HRV2 2Apro.

Article Title: The interplay between viperin antiviral activity, lipid droplets and Junín mammarenavirus multiplication.
Article Snippet: Viperin was docked into N protein utilizing two different protein-protein docking softwares, ClusPro (Comeau et al., 2004) and ZDock (Pierce et al., 2014), in a comparative manner.

Article Title: p73 induction by Abrus agglutinin facilitates Snail ubiquitination to inhibit epithelial to mesenchymal transition in oral cancer.
Article Snippet: Accepted Manuscript p73 induction by Abrus agglutinin facilitates Snail ubiquitination to inhibit epithelial to mesenchymal transition in oral cancer Niharika Sinha , Biswa Ranjan Meher , Prajna Paramita Naik , Prashanta Kumar Panda , Subhadip Mukhapadhyay , Tapas K Maiti , Sujit K Bhutia PII: S0944-7113(18)30268-X DOI: https://doi.org/10.1016/j.phymed.2018.08.003 Reference: PHYMED 52584 To appear in: Phytomedicine Received date: 28 February 2018 Revised date: 21 May 2018 Accepted date: 5 August 2018 Please cite this article as: Niharika Sinha , Biswa Ranjan Meher , Prajna Paramita Naik , Prashanta Kumar Panda , Subhadip Mukhapadhyay , Tapas K Maiti , Sujit K Bhutia , p73 induction by Abrus agglutinin facilitates Snail ubiquitination to inhibit epithelial to mesenchymal transition in oral cancer, Phytomedicine (2018), doi: https://doi.org/10.1016/j.phymed.2018.08.003 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form.

Article Title: Excavating the surface-associated and secretory proteome of Mycobacterium leprae for identifying vaccines and diagnostic markers relevant immunodominant epitopes.
Article Snippet: We employed rigid body docking program ClusPro 2.0 (Comeau et al. 2004) for this purpose.

Article Title: Venom-derived peptides inhibiting Kir channels: Past, present, and future.
Article Snippet: Venom-derived peptides inhibiting Kir channels: Past, present, and future

Software:

Article Title: In silico design of a vaccine candidate based on autotransporters and HSP against the causal agent of shigellosis, Shigella flexneri.
Article Snippet: Shigellosis is a diarrheal disease that causes high mortality every year, especially in children, elderly and immunocompromised patients.. Recently, resistance strains to antibiotic therapy are in the rise and the World Health Organization prioritizes the development of a safe vaccine against the most common causal agent of shigellosis, Shigella flexneri.. This pathogen uses autotransporter proteins such as SigA, Pic and Sap to increase virulence and some of them have been described as highly immunogenic proteins.



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Table 2

Journal: Structure (London, England : 1993)

Article Title: ProtLID, a residue-based pharmacophore approach to identify cognate protein ligands in the Immunoglobulin Superfamily

doi: 10.1016/j.str.2016.10.012

Figure Lengend Snippet: Table 2

Article Snippet: Ligand prediction using docking algorithms ClusPro Each receptor was docked against each candidate structure using the ClusPro server ( http://cluspro.bu.edu ( Brenke et al., 2012 ; Comeau et al., 2004a , b ; Kozakov et al., 2013 ; Kozakov et al., 2006 )) with three different force fields: antigen:antibody (ab), enzyme:inhibitor (ei), and other (o).

Techniques: