mapsolver (OpGen Inc)

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OpGen Inc mapsolver
Mapsolver, supplied by OpGen Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/a+custom-written+batch+processing+mathematica+code/mapsolver/us11124819-549-29-28
Average 90 stars, based on 1 article reviews

mapsolver - by Bioz Stars, 2026-09

90/100 stars

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Sequencing:

Article Title: Comparative genomic analyses of Mycoplasma synoviae vaccine strain MS-H and its wild-type parent strain 86079/7NS: implications for the identification of virulence factors and applications in diagnosis of M. synoviae .
Article Snippet: To cite this article: Ling Zhu, Muhammad A. Shahid, John Markham, Glenn F. Browning, Amir H. Noormohammadi & Marc S. Marenda (2019): Comparative Genomic Analyses of Mycoplasma synoviae Vaccine Strain MS-H and Its Wild-type Parent Strain 86079/7NS: Implications for the Identification of Virulence Factors and Applications in Diagnosis of M. synoviae, Avian Pathology, DOI: 10.1080/03079457.2019.1637514

Article Title: Genes involved in astaxanthin biosynthesis
Article Snippet: .. Tools used included assemblers Ray (11), ABySS (12), and ALLPATHS-LG (13, 14); aligners Bowtie (15), Bowtie2 (16), HISAT/HISAT2 (17), BLAST (18), BLAST+(19), LAST (20), LASTZ (21), BLAT (22), OpGen, Inc.'s MapSolver, BLASR (23), and Parasail (24); error correctors/double-sequenced end overlappers/adapter trimmers Proovread (25), SeqPrep (26), and Cutadapt (27); sequence analyzers Jellyfish (28), MUMmer (29), TRF (30), IRF (31), RepeatMasker (32) with Repbase Update (33), and RepeatModeler (34); gene callers AUGUSTUS (35) and tRNAscan-SE (36); visualization/analysis tools Savant (37), IGB (38), IGV (39), Biomatters Limited's Geneious, and Circos (40); GUI automaton Keyboard Maestro of Stairways Software Pty Ltd.; standard UNIX text-processing tools as well as bioinformatic utilities such as SAMtools (41), DEXTRACTOR (42), HTSeq (43), and EMBOSS (44); databases of biological knowledge such as NCBI (45), Pfam (46), and Rfam (47); as well as custom one-off programs and scripts written in languages such as C++, Perl, Wolfram's Mathematica, and MathWorks's MATLAB. ..

In Silico:

Generated:

Article Title: A conserved tad pilus promotes Vibrio vulnificus oyster colonization.
Article Snippet: A conserved Tad pilus promotes Vibrio vulnificus oyster-colonization Meng Pub, Patrick Duriezc, Mattan Arazia and Dean A. Rowe-Magnusa,b aDepartment of Biology and bMolecular and Cellular Biochemistry, Indiana University Bloomington, IN; cConseil scolaire Viamonde, ON, Canada Running head: A Tad pilus promotes V. vulnificus oyster colonization Summary.. Vibrio vulnificus has the highest death rate (>35%) and per-case economic burden ($3.3 million) of any foodborne pathogen in the US.. Infections occur via open wounds or following ingestion of contaminated seafood, most infamously oysters.

Article Title: Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium
Article Snippet: .. To further validate the genome assembly of regions identified as centromeres of V. dahliae strain JR2, the genome assembly was compared to the previously generated optical map ( ) using MapSolver (v 3.2; OpGen, Gaithersburg, MD). ..

Article Title: Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium
Article Snippet: .. To further validate the genome assembly of regions identified as centromeres of V. dahliae strain JR2, the genome assembly was compared to the previously generated optical map (35) using MapSolver (v 3.2; OpGen, Gaithersburg, MD). ..

Software:

Article Title: Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes
Article Snippet: .. Scaffolds construction was manually performed in CLC Genomics Workbench (CLC-gw) version 7.0 (Qiagen) software using the visualization of the contigs mapped and ordered according to the restriction sites of the strains in MapSolver TM (OpGen). ..

Review