metamorph 3d software (MetaMorph Inc)
90
Structured Review
MetaMorph Inc
metamorph 3d software
Metamorph 3d Software, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+deconvolution+constrained+iterative+algorithm/metamorph+software/pmc03345987-110-17-16
Average 90 stars, based on 1 article reviews
Metamorph 3d Software, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+deconvolution+constrained+iterative+algorithm/metamorph+software/pmc03345987-110-17-16
Average 90 stars, based on 1 article reviews
metamorph 3d software - by Bioz Stars,
2026-09
90/100 stars
Images
1) Product Images from "Directing Integrin-linked Endocytosis of Recombinant AAV Enhances Productive FAK-dependent Transduction"
Article Title: Directing Integrin-linked Endocytosis of Recombinant AAV Enhances Productive FAK-dependent Transduction
Journal: Molecular Therapy
doi: 10.1038/mt.2011.295
Figure Legend Snippet: Manganese treatment increases adeno-associated virus (AAV) clustering. (a, b) Treatment with Mn++ increases clustering of rAAV2 and sensitivity of detecting fluorescently labeled virions. Primary mouse embryonic fibroblasts (PMEF) were infected with Alexa Fluor568–rAAV2 (Alexa568-AAV2) for 1 hour with or without Mn++ treatment. To accurately image both small and large clusters of rAAV, both low (i.e., high sensitivity) and high (i.e., low sensitivity) thresholds were used when capturing confocal microscopic images. The high threshold was chosen to highlight the increased quantity of large and bright AAV clusters in Mn++ treated cells (b), while the low threshold panel demonstrates the presence of AAV on untreated cells (a). (c) The average size and intensity of AAV clusters increases with Mn++ treatment. Stacks of confocal images taken through cells infected with Alexa568-rAAV2 for 1 hour, as in (a, b), were 3D deconvoluted with MetaMorph software. The average intensity and volume of AAV clusters from randomly chosen cells from each condition are shown. Values represent the mean ± SEM of N = 10 cells from a representative experiment. Asterisks mark significant differences as assessed by a two-tailed Student's t-test (P < 0.05 when using averages from each of N = 10 cells in the analysis). Fold changes are also marked. (d) Effect of Mn++ treatment on the distribution of AAV object size as a function of intensity. The average size and intensity of AAV objects used for calculations in (c) is presented in an XY scatter plot. The percent of objects contained within selected ranges of AAV cluster size is indicated. For example, in untreated cells, 89.8% of AAV2 objects are between 0 and 0.25 µm3, which is significantly lower in Mn++-treated cells (75.8%). Statistical comparison between these two groups was significant using at two-tailed Mann–Whitney test (P < 0.0001). The number of objects quantified in each panel is indicated.
Techniques Used: Labeling, Infection, Software, Two Tailed Test, MANN-WHITNEY
Figure Legend Snippet: Manganese induces recruitment of intracellular vinculin to sites of recombinant adeno-associated virus 2 (rAAV2) clustering on integrins. (a, b) AAV colocalization with α5 integrins is increased with Mn++ treatment. Primary mouse embryonic fibroblasts (PMEFs) expressing green fluorescent protein (GFP)-tagged α5 integrin were infected with Alexa568-AAV2 for 1 hour with or without Mn++ treatment. The images displayed are a single slice from a stack of images that were deconvoluted with Metamorph 3D software. Combined channels are given on the left in color and signal channel images for integrin (green) and rAAV2 (red) are given in black and white in the middle panels. In the right panels labeled “Colocalized Mask,” a mask was created using Zeiss LSM software that depicts only colocalized pixels, but does not change the relative intensity of either AAV or integrin staining. A high threshold was used for these images so Mn++-induced clustering could be better appreciated. (c, d) PMEFs were infected with Alexa568-AAV2 for 1 hour with or without Mn++ treatment and stained for vinculin (green). A series of confocal slices were then taken through each cell. The first panel on the left is a slice from the bottom of the cell to depict focal adhesions. These images demonstrate that rAAV2 does not efficiently recruit to focal adhesions that contain vinculin (arrows), even in the presence of Mn++. In the second panel from the left, a colocalization mask was applied to each slice throughout the entire cell and then projected onto a single 2D-image to demonstrate total rAAV2/vinculin colocalization in the cell. The third and fourth panels from the left are magnifications of the area marked in the left panel. “Colocalization mask: XYZ” refers to the Z-stacked masked sections throughout the cell projected into a single 2D image, while “Colocalization mask: XY” refers a mask of a single confocal slice. (e) The effect of integrin-binding peptide RGDS on Mn++-induced aggregation of rAAV2. Transformed control MEFs were infected with Alexa568-rAAV2 for 1 hour in the presence of Mn++ and Mn++ with RGDS peptide. Confocal images are shown with rAAV2 in white and nucleus in blue. Boxed region is enlarged in the inset of each panel.
Techniques Used: Recombinant, Expressing, Infection, Software, Labeling, Staining, Binding Assay, Transformation Assay
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