Journal: Applied and Environmental Microbiology

Article Title: Application of Stereolithographic Custom Models for Studying the Impact of Biofilms and Mineral Precipitation on Fluid Flow

doi: 10.1128/aem.71.12.8721-8728.2005

Figure Lengend Snippet: FIG. 6. Impact of calcite precipitation and microbial colonization by Sporosarcina pasteurii on liquid flow through a bilayer flow model. (A) Image of upper layer of the uncolonized model; (B) image of lower layer of the uncolonized bilayer; (C) image of upper layer of the colonized model; (D) image of lower layer of the colonized model. The flow rate during the dye tests was 80 l/min, and flow direction is right to left. Images were taken 2 min after the soluble dye first entered the flow model.

Article Snippet: Two cultures were utilized: a Sphingomonas sp. and Sporosarcina (Bacillus) pasteurii (ATCC 11859).

Techniques:

Journal: Applied and Environmental Microbiology

Article Title: Application of Stereolithographic Custom Models for Studying the Impact of Biofilms and Mineral Precipitation on Fluid Flow

doi: 10.1128/aem.71.12.8721-8728.2005

Figure Lengend Snippet: FIG. 7. Impact of calcite precipitation mediated by Sporosarcina pasteurii on liquid flow through the natural fracture flow model. (A) Top view of the entire model; (B) close-up image of the control model; (C) image of the path taken by the colloidal dye as the dye first reached the effluent ports of the flow model; (D) image of dye path through flow model with precipitate as the dye first reached the effluent port. Flow tests were run at 200 l/min, and flow direction is right to left.

Article Snippet: Two cultures were utilized: a Sphingomonas sp. and Sporosarcina (Bacillus) pasteurii (ATCC 11859).

Techniques: Control

Journal: Applied and Environmental Microbiology

Article Title: Application of Stereolithographic Custom Models for Studying the Impact of Biofilms and Mineral Precipitation on Fluid Flow

doi: 10.1128/aem.71.12.8721-8728.2005

Figure Lengend Snippet: FIG. 8. Impact of calcite precipitation mediated by Sporosarcina pasteurii on liquid flow through the fractal fracture flow model. (A) Top view of flow model; (B) image of colloidal dye path taken as the dye first reached the effluent ports of the flow model about 5 1/2 min after the dye was injected; (C) image of colloidal dye path taken later in the flow test; (D) top view of flow model with white calcite precipitate; (E) image of dye path through flow model with precipitate as the dye first reached the effluent port; (F) image of dye path through the flow model with precipitate, taken 15 min later. Dye tests were run at a flow rate of 200 l/min, and flow direction is right to left.

Article Snippet: Two cultures were utilized: a Sphingomonas sp. and Sporosarcina (Bacillus) pasteurii (ATCC 11859).

Techniques: Injection

Journal: Molecular Systems Biology

Article Title: High-throughput protein characterization by complementation using DNA barcoded fragment libraries

doi: 10.1038/s44320-024-00068-z

Figure Lengend Snippet: Summary table on genome fragment libraries generated.

Article Snippet: Sphingomonas koreensis JSS26 (DSMZ 15582) , 9.8E + 04 , 34,200 , 352,158 , 2424 , 4167 , 91%.

Techniques: Generated

Journal: Molecular Systems Biology

Article Title: High-throughput protein characterization by complementation using DNA barcoded fragment libraries

doi: 10.1038/s44320-024-00068-z

Figure Lengend Snippet: Summary of PacBio sequencing of fragment libraries, genes per fragment, and fragments covering each gene.

Article Snippet: Sphingomonas koreensis JSS26 (DSMZ 15582) , 9.8E + 04 , 34,200 , 352,158 , 2424 , 4167 , 91%.

Techniques: PacBio Sequencing

Journal: Molecular Systems Biology

Article Title: High-throughput protein characterization by complementation using DNA barcoded fragment libraries

doi: 10.1038/s44320-024-00068-z

Figure Lengend Snippet: Reagents and tools table

Article Snippet: Sphingomonas koreensis JSS26 (DSMZ 15582) , 9.8E + 04 , 34,200 , 352,158 , 2424 , 4167 , 91%.

Techniques: Recombinant, Sequencing, Plasmid Preparation, Gel Extraction, DNA Extraction, Purification, Sterility, Membrane, Electroporation, Saline, Software, Spectrophotometry, Electrophoresis

Journal: Microorganisms

Article Title: Sphingomonas sediminicola Dae20 Is a Highly Promising Beneficial Bacteria for Crop Biostimulation Due to Its Positive Effects on Plant Growth and Development.

doi: 10.3390/microorganisms11082061

Figure Lengend Snippet: Figure 1. Arabidopsis thaliana root phenotype (a), primary root length (b), lateral root (LR) density (c), root hair (RH) length (d), RH density (e), shoot dry weight (f) and root dry weight (g) of 10-day-old Arabidopsis thaliana not inoculated (NI) or inoculated with different bacterial concentrations expressed as the number of colony-forming units (CFU) of S. sediminicola Dae20. Error bars represent SD. Letters represent a significant difference among modalities.

Article Snippet: The bacterial strain used in this study was Sphingomonas sediminicola Dae20 [20], provided by the Leibniz Institute DSMZ (DSM-18106).

Techniques:

Journal: Microorganisms

Article Title: Sphingomonas sediminicola Dae20 Is a Highly Promising Beneficial Bacteria for Crop Biostimulation Due to Its Positive Effects on Plant Growth and Development.

doi: 10.3390/microorganisms11082061

Figure Lengend Snippet: Figure 2. (a) Primary root, (b) lateral root (LR) density, (c) shoot fresh weight and (d) root fresh weight in 10-day-old Arabidopsis thaliana not inoculated (NI), inoculated with S. sediminicola Dae20 or grown in the presence of volatile organic compounds (VOC) released by the bacterial strain. Error bars represent SD. Letters represent a significant difference among modalities.

Article Snippet: The bacterial strain used in this study was Sphingomonas sediminicola Dae20 [20], provided by the Leibniz Institute DSMZ (DSM-18106).

Techniques:

Journal: Microorganisms

Article Title: Sphingomonas sediminicola Dae20 Is a Highly Promising Beneficial Bacteria for Crop Biostimulation Due to Its Positive Effects on Plant Growth and Development.

doi: 10.3390/microorganisms11082061

Figure Lengend Snippet: Figure 3. DR5::GUS (a) and ARR5::GUS (b) signals in 10-day-old Arabidopsis plants non-inoculated or inoculated with Sphingomonas sediminicola Dae20. Bars = 100 µm. (c) Development of S. sediminicola Dae20 on DF medium in a nitrogen-free medium (negative control), DF with ammonium sulphate (positive control) and DF with ACC as sole nitrogen source.

Article Snippet: The bacterial strain used in this study was Sphingomonas sediminicola Dae20 [20], provided by the Leibniz Institute DSMZ (DSM-18106).

Techniques: Negative Control, Positive Control

Journal: Microorganisms

Article Title: Sphingomonas sediminicola Dae20 Is a Highly Promising Beneficial Bacteria for Crop Biostimulation Due to Its Positive Effects on Plant Growth and Development.

doi: 10.3390/microorganisms11082061

Figure Lengend Snippet: Figure 4. Relative expression of genes involved in auxin, abscisic acid, and salicylic acid pathways when S. sediminicola Dae20 was inoculated to Arabidospsis seedlings for 10 days. Error bars repre- sent SD. Statistical differences were based on Kruskal–Wallis rank sum tests with Holm’s p-adjust. ***, p < 0.001.

Article Snippet: The bacterial strain used in this study was Sphingomonas sediminicola Dae20 [20], provided by the Leibniz Institute DSMZ (DSM-18106).

Techniques: Expressing

Journal: Microorganisms

Article Title: Sphingomonas sediminicola Dae20 Is a Highly Promising Beneficial Bacteria for Crop Biostimulation Due to Its Positive Effects on Plant Growth and Development.

doi: 10.3390/microorganisms11082061

Figure Lengend Snippet: Figure 5. Root of non-inoculated and Sphingomonas sediminicola Dae20-inoculated rapeseed (a) and (b) mustard plants, scale bar = 500 µm. (c) Root hair (RH) length of 7-day-old rapeseed or mustard plants non-inoculated (white bar) or inoculated with S. sediminicola Dae20 (gray bar). Error bars represent SD. Statistical differences were based on Kruskal–Wallis rank sum tests with Holm’s p-adjust. ***, p < 0.001.

Article Snippet: The bacterial strain used in this study was Sphingomonas sediminicola Dae20 [20], provided by the Leibniz Institute DSMZ (DSM-18106).

Techniques:

Journal: Microorganisms

Article Title: Sphingomonas sediminicola Dae20 Is a Highly Promising Beneficial Bacteria for Crop Biostimulation Due to Its Positive Effects on Plant Growth and Development.

doi: 10.3390/microorganisms11082061

Figure Lengend Snippet: Figure 6. Phenotypic traits of non-inoculated (white bar) and Sphingomonas sediminicola Dae20- inoculated (gray bar) mustard (a–d) and rapeseed (e–h) plants. (a,e) Shoot length; (b,f) root length; (c,d) shoot and root dry biomass; (d,h) SPAD values of cotyledons and penultimate leaves. Statistical differences were based on Kruskal–Wallis rank sum tests with Holm’s p-adjust. *, p < 0.05; **, p < 0.01; ***, p < 0.001.

Article Snippet: The bacterial strain used in this study was Sphingomonas sediminicola Dae20 [20], provided by the Leibniz Institute DSMZ (DSM-18106).

Techniques:

Journal: Interdisciplinary Perspectives on Infectious Diseases

Article Title: Ebselen: A Promising Repurposing Drug to Treat Infections Caused by Multidrug-Resistant Microorganisms

doi: 10.1155/2024/9109041

Figure Lengend Snippet: In vitro antibacterial effect of ebselen on Gram-positive bacteria and mycobacteria.

Article Snippet: Enterococcus spp. , E. faecalis , ATCC 51229 (VRE) , 0.5 , , [ ] .

Techniques: In Vitro, Bacteria