sbml Search Results


systems biology markup language (sbml)  (Biomodels LLC)
90
Biomodels LLC systems biology markup language (sbml)
Systems Biology Markup Language (Sbml), supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc07041932-119-7-23?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
systems biology markup language (sbml) - by Bioz Stars, 2026-07
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sbml-model encoding  (Biomodels LLC)
90
Biomodels LLC sbml-model encoding
Sbml Model Encoding, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc09760030-237-14-22?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
sbml-model encoding - by Bioz Stars, 2026-07
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sbml files  (Biomodels LLC)
90
Biomodels LLC sbml files
Sbml Files, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc08269265-189-0-10?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
sbml files - by Bioz Stars, 2026-07
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sbml files corresponding to the original and the reduced yeast glycolysis models  (Biomodels LLC)
90
Biomodels LLC sbml files corresponding to the original and the reduced yeast glycolysis models
Schematic of the original and reduced <t>yeast-glycolysis</t> networks. The left-hand panel is a schematic representation of the yeast glycolysis model used for model reduction. The full model description and an explanation of all the abbreviations is found in . The right-hand panel represents the reduced model after deleting 5 complexes (F6P, P2G, P3G, G6P and PEP). The blue arrows in the two panels indicate external fluxes.
Sbml Files Corresponding To The Original And The Reduced Yeast Glycolysis Models, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc04041147-245-15-4?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
sbml files corresponding to the original and the reduced yeast glycolysis models - by Bioz Stars, 2026-07
90/100 stars
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sbml source code  (Biomodels LLC)
90
Biomodels LLC sbml source code
Schematic of the original and reduced <t>yeast-glycolysis</t> networks. The left-hand panel is a schematic representation of the yeast glycolysis model used for model reduction. The full model description and an explanation of all the abbreviations is found in . The right-hand panel represents the reduced model after deleting 5 complexes (F6P, P2G, P3G, G6P and PEP). The blue arrows in the two panels indicate external fluxes.
Sbml Source Code, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc04762949-77-1-12?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
sbml source code - by Bioz Stars, 2026-07
90/100 stars
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sbml code  (Biomodels LLC)
90
Biomodels LLC sbml code
Schematic of the original and reduced <t>yeast-glycolysis</t> networks. The left-hand panel is a schematic representation of the yeast glycolysis model used for model reduction. The full model description and an explanation of all the abbreviations is found in . The right-hand panel represents the reduced model after deleting 5 complexes (F6P, P2G, P3G, G6P and PEP). The blue arrows in the two panels indicate external fluxes.
Sbml Code, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc05614911-241-1-20?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
sbml code - by Bioz Stars, 2026-07
90/100 stars
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best approximating model with the accession number of model1209110001  (Biomodels LLC)
90
Biomodels LLC best approximating model with the accession number of model1209110001
Schematic of the original and reduced <t>yeast-glycolysis</t> networks. The left-hand panel is a schematic representation of the yeast glycolysis model used for model reduction. The full model description and an explanation of all the abbreviations is found in . The right-hand panel represents the reduced model after deleting 5 complexes (F6P, P2G, P3G, G6P and PEP). The blue arrows in the two panels indicate external fluxes.
Best Approximating Model With The Accession Number Of Model1209110001, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc04046068-262-12-14?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
best approximating model with the accession number of model1209110001 - by Bioz Stars, 2026-07
90/100 stars
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sbml model  (Biomodels LLC)
90
Biomodels LLC sbml model
CySBGN rendering comparison. Rendering comparison among the tools <t>supporting</t> <t>SBGN.</t> The comparison is automatically generated by a python script and it is hosted at http://libsbgn.sourceforge.net/render_comparison/ . The first column shows the original diagrams and the last column shows the rendered diagrams obtained with CySBGN. The obtained rendering in PathVisio, <t>SBML</t> Layout and VANTED are shown in the second, third and fourth column, respectively.
Sbml Model, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc03599859-95-12-8?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
sbml model - by Bioz Stars, 2026-07
90/100 stars
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sbml file biomd0000000149.xml  (Biomodels LLC)
90
Biomodels LLC sbml file biomd0000000149.xml
CySBGN rendering comparison. Rendering comparison among the tools <t>supporting</t> <t>SBGN.</t> The comparison is automatically generated by a python script and it is hosted at http://libsbgn.sourceforge.net/render_comparison/ . The first column shows the original diagrams and the last column shows the rendered diagrams obtained with CySBGN. The obtained rendering in PathVisio, <t>SBML</t> Layout and VANTED are shown in the second, third and fourth column, respectively.
Sbml File Biomd0000000149.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc04933380__pgen__1006132__s001-75-3-8?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
sbml file biomd0000000149.xml - by Bioz Stars, 2026-07
90/100 stars
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sbml  (Biomodels LLC)
90
Biomodels LLC sbml
CySBGN rendering comparison. Rendering comparison among the tools <t>supporting</t> <t>SBGN.</t> The comparison is automatically generated by a python script and it is hosted at http://libsbgn.sourceforge.net/render_comparison/ . The first column shows the original diagrams and the last column shows the rendered diagrams obtained with CySBGN. The obtained rendering in PathVisio, <t>SBML</t> Layout and VANTED are shown in the second, third and fourth column, respectively.
Sbml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc05602534-89-20-37?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
sbml - by Bioz Stars, 2026-07
90/100 stars
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sbml format metabolic model  (Biomodels LLC)
90
Biomodels LLC sbml format metabolic model
CySBGN rendering comparison. Rendering comparison among the tools <t>supporting</t> <t>SBGN.</t> The comparison is automatically generated by a python script and it is hosted at http://libsbgn.sourceforge.net/render_comparison/ . The first column shows the original diagrams and the last column shows the rendered diagrams obtained with CySBGN. The obtained rendering in PathVisio, <t>SBML</t> Layout and VANTED are shown in the second, third and fourth column, respectively.
Sbml Format Metabolic Model, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc03789786-119-2-15?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
sbml format metabolic model - by Bioz Stars, 2026-07
90/100 stars
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tools for converting sbml and cellml to biopax  (Biomodels LLC)
90
Biomodels LLC tools for converting sbml and cellml to biopax
CySBGN rendering comparison. Rendering comparison among the tools <t>supporting</t> <t>SBGN.</t> The comparison is automatically generated by a python script and it is hosted at http://libsbgn.sourceforge.net/render_comparison/ . The first column shows the original diagrams and the last column shows the rendered diagrams obtained with CySBGN. The obtained rendering in PathVisio, <t>SBML</t> Layout and VANTED are shown in the second, third and fourth column, respectively.
Tools For Converting Sbml And Cellml To Biopax, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sbml/pmc01660554-120-11-14?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
tools for converting sbml and cellml to biopax - by Bioz Stars, 2026-07
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Image Search Results


Schematic of the original and reduced yeast-glycolysis networks. The left-hand panel is a schematic representation of the yeast glycolysis model used for model reduction. The full model description and an explanation of all the abbreviations is found in . The right-hand panel represents the reduced model after deleting 5 complexes (F6P, P2G, P3G, G6P and PEP). The blue arrows in the two panels indicate external fluxes.

Journal: BMC Systems Biology

Article Title: A model reduction method for biochemical reaction networks

doi: 10.1186/1752-0509-8-52

Figure Lengend Snippet: Schematic of the original and reduced yeast-glycolysis networks. The left-hand panel is a schematic representation of the yeast glycolysis model used for model reduction. The full model description and an explanation of all the abbreviations is found in . The right-hand panel represents the reduced model after deleting 5 complexes (F6P, P2G, P3G, G6P and PEP). The blue arrows in the two panels indicate external fluxes.

Article Snippet: We have submitted to Biomodels two SBML files corresponding to the original and the reduced yeast glycolysis models (submission identifiers MODEL1403250001 and MODEL1403250002 respectively).

Techniques:

Reduction of the yeast glycolysis model. Left-hand panel: minimum error integral versus number of deleted complexes (we have taken T =1.5 min for the computation of the error integral). Right-hand panel: identity of the deleted complexes and their convergence times.

Journal: BMC Systems Biology

Article Title: A model reduction method for biochemical reaction networks

doi: 10.1186/1752-0509-8-52

Figure Lengend Snippet: Reduction of the yeast glycolysis model. Left-hand panel: minimum error integral versus number of deleted complexes (we have taken T =1.5 min for the computation of the error integral). Right-hand panel: identity of the deleted complexes and their convergence times.

Article Snippet: We have submitted to Biomodels two SBML files corresponding to the original and the reduced yeast glycolysis models (submission identifiers MODEL1403250001 and MODEL1403250002 respectively).

Techniques:

Comparison of concentration profiles of yeast-glycolysis metabolites between the full and reduced models.

Journal: BMC Systems Biology

Article Title: A model reduction method for biochemical reaction networks

doi: 10.1186/1752-0509-8-52

Figure Lengend Snippet: Comparison of concentration profiles of yeast-glycolysis metabolites between the full and reduced models.

Article Snippet: We have submitted to Biomodels two SBML files corresponding to the original and the reduced yeast glycolysis models (submission identifiers MODEL1403250001 and MODEL1403250002 respectively).

Techniques: Comparison, Concentration Assay

CySBGN rendering comparison. Rendering comparison among the tools supporting SBGN. The comparison is automatically generated by a python script and it is hosted at http://libsbgn.sourceforge.net/render_comparison/ . The first column shows the original diagrams and the last column shows the rendered diagrams obtained with CySBGN. The obtained rendering in PathVisio, SBML Layout and VANTED are shown in the second, third and fourth column, respectively.

Journal: BMC Bioinformatics

Article Title: CySBGN: A Cytoscape plug-in to integrate SBGN maps

doi: 10.1186/1471-2105-14-17

Figure Lengend Snippet: CySBGN rendering comparison. Rendering comparison among the tools supporting SBGN. The comparison is automatically generated by a python script and it is hosted at http://libsbgn.sourceforge.net/render_comparison/ . The first column shows the original diagrams and the last column shows the rendered diagrams obtained with CySBGN. The obtained rendering in PathVisio, SBML Layout and VANTED are shown in the second, third and fourth column, respectively.

Article Snippet: This allows one to pick a pathway from BioModels, download the respective SBML model and then generate the SBGN diagram that can be further used as a publication diagram or simply shared with other users.

Techniques: Comparison, Generated