Journal: BMC Genomics

Article Title: Transcriptome sequencing and annotation of the polychaete Hermodice carunculata (Annelida, Amphinomidae)

doi: 10.1186/s12864-015-1565-6

Figure Lengend Snippet: Venn diagram distribution of similarity search results for Hermodice carunculata. Based on 58,454 predicted Open Reading Frames (ORFs) of genes longer than 200 amino acids. The number of unique sequence-based annotation is the best sum of unique BlastP hits (E-value of 2e −15 ) from Capitella teleta and Helobdella robusta proteome, respectively.

Article Snippet: We have also made available at LabArchives ( https://mynotebook.labarchives.com/share/smehr/MjAuOHw4NTE4MS8xNi9UcmVlTm9kZS8yNzE4MjI2NjQ1fDUyLjg =): 1) a Fasta file of homologous of contigs shared between Capitella teleta , Helobdella robusta and Hermodice carunculata ; 2) a Fasta file of homologous contigs shared between Eurythoe complanata , Paramphinome jeffreysii and Hermodice carunculata ; and 3) the functionally annotated Open Reading Frames generated from the Hermodice carunculata transcriptome.

Techniques: Sequencing

Journal: BMC Genomics

Article Title: Transcriptome sequencing and annotation of the polychaete Hermodice carunculata (Annelida, Amphinomidae)

doi: 10.1186/s12864-015-1565-6

Figure Lengend Snippet: Functional annotation of Hermodice carunculata transcripts. The 30 most abundant GOslim terms based on A molecular function, B biological processes, C cellular component.

Article Snippet: We have also made available at LabArchives ( https://mynotebook.labarchives.com/share/smehr/MjAuOHw4NTE4MS8xNi9UcmVlTm9kZS8yNzE4MjI2NjQ1fDUyLjg =): 1) a Fasta file of homologous of contigs shared between Capitella teleta , Helobdella robusta and Hermodice carunculata ; 2) a Fasta file of homologous contigs shared between Eurythoe complanata , Paramphinome jeffreysii and Hermodice carunculata ; and 3) the functionally annotated Open Reading Frames generated from the Hermodice carunculata transcriptome.

Techniques: Functional Assay

Journal: BMC Genomics

Article Title: Transcriptome sequencing and annotation of the polychaete Hermodice carunculata (Annelida, Amphinomidae)

doi: 10.1186/s12864-015-1565-6

Figure Lengend Snippet: Maximum likelihood tree of 21 Attractin proteins and one newly identified attractin sequence from Hermodice carunculata . The newly identified attractin is colored red.

Article Snippet: We have also made available at LabArchives ( https://mynotebook.labarchives.com/share/smehr/MjAuOHw4NTE4MS8xNi9UcmVlTm9kZS8yNzE4MjI2NjQ1fDUyLjg =): 1) a Fasta file of homologous of contigs shared between Capitella teleta , Helobdella robusta and Hermodice carunculata ; 2) a Fasta file of homologous contigs shared between Eurythoe complanata , Paramphinome jeffreysii and Hermodice carunculata ; and 3) the functionally annotated Open Reading Frames generated from the Hermodice carunculata transcriptome.

Techniques: Sequencing

Journal: BMC Genomics

Article Title: Transcriptome sequencing and annotation of the polychaete Hermodice carunculata (Annelida, Amphinomidae)

doi: 10.1186/s12864-015-1565-6

Figure Lengend Snippet: Fluorescent macro image of Hermodice carunculata using 450–500 nm excitation and 514 nm LP emission (A) ; white light image (B) ; and fluorescent macro comparison (using 450-500 nm excitation and 514nmLP emission) (C) ; confocal images (D- G) obtained with a Olympus Fluoview FV1000 (Olympus, Japan) confocal laser scanning microscope using an Olympus LUMFL 60×/1.10 W objective (excitation 488 nm wavelength Ar-laser was used), illustrating distrubution of green and red fluorescence; (H) Emission spectra using an Ocean Optics USB2000+ miniature spectrometer (Dunedin, FL) equipped with a hand-held fiber optic probe (Ocean Optics ZFQ-12135).

Article Snippet: We have also made available at LabArchives ( https://mynotebook.labarchives.com/share/smehr/MjAuOHw4NTE4MS8xNi9UcmVlTm9kZS8yNzE4MjI2NjQ1fDUyLjg =): 1) a Fasta file of homologous of contigs shared between Capitella teleta , Helobdella robusta and Hermodice carunculata ; 2) a Fasta file of homologous contigs shared between Eurythoe complanata , Paramphinome jeffreysii and Hermodice carunculata ; and 3) the functionally annotated Open Reading Frames generated from the Hermodice carunculata transcriptome.

Techniques: Laser-Scanning Microscopy, Fluorescence