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Human Metabolome Technologies America relational database of metabolomics pathways
Databases incorporated into <t> RaMP, </t> including the number of metabolites, genes, and <t> pathways. </t>
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Image Search Results


Databases incorporated into  RaMP,  including the number of metabolites, genes, and  pathways.

Journal: Metabolites

Article Title: RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites

doi: 10.3390/metabo8010016

Figure Lengend Snippet: Databases incorporated into RaMP, including the number of metabolites, genes, and pathways.

Article Snippet: To facilitate such analyses at a pathway level, we have developed RaMP (Relational database of Metabolomics Pathways), which combines biological pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG), Reactome, WikiPathways, and the Human Metabolome DataBase (HMDB).

Techniques:

Output from pathway overrepresentation analysis using the RaMP R package web application. Significant pathways are derived from a list of metabolites and genes that are altered in breast tumor tissue relative to adjacent tumor tissue in a publicly available breast cancer dataset (see Methods). ( a ) Nucleic acid metabolism cluster of statistically significant pathways resulting from analysis using metabolites as input. ( b ) Glucose metabolism and ( c ) transcriptional regulation pathway clusters resulting from analysis using metabolites and genes as input.

Journal: Metabolites

Article Title: RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites

doi: 10.3390/metabo8010016

Figure Lengend Snippet: Output from pathway overrepresentation analysis using the RaMP R package web application. Significant pathways are derived from a list of metabolites and genes that are altered in breast tumor tissue relative to adjacent tumor tissue in a publicly available breast cancer dataset (see Methods). ( a ) Nucleic acid metabolism cluster of statistically significant pathways resulting from analysis using metabolites as input. ( b ) Glucose metabolism and ( c ) transcriptional regulation pathway clusters resulting from analysis using metabolites and genes as input.

Article Snippet: To facilitate such analyses at a pathway level, we have developed RaMP (Relational database of Metabolomics Pathways), which combines biological pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG), Reactome, WikiPathways, and the Human Metabolome DataBase (HMDB).

Techniques: Derivative Assay