Journal: Cell reports

Article Title: Viral Fitness Landscapes in Diverse Host Species Reveal Multiple Evolutionary Lines for the NS1 Gene of Influenza A Viruses

doi: 10.1016/j.celrep.2019.11.070

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: Illumina deep-sequencing raw data , This manuscript , https://data.mendeley.com/datasets/77x6pyfk79/1 https://data.mendeley.com/datasets/ryr859j6pr/1.

Techniques: Virus, Recombinant, Purification, One Step RT-PCR, Reverse Transcription, Gel Extraction, Library Quantification, DNA Library Preparation, Sample Prep, Software

Journal: iScience

Article Title: Convergence of root ectomycorrhizal fungal communities across Pinaceae developmental stages in temperate forests in northeastern China

doi: 10.1016/j.isci.2025.112754

Figure Lengend Snippet: Heat tree of taxonomic classification and ASV numbers of ectomycorrhizal fungi (EMF) Node size is proportional to the relative abundance of the taxon, edge width indicates the mean proportion of that taxon belonging to that group, and color intensity corresponds to the number of ASVs.

Article Snippet: Raw sequencing data of ectomycorrhizal fungal amplicons , This paper, National Center for Biotechnology Information (NCBI) Sequence Read Archives (SRA) , BioProject number PRJNA1051329.

Techniques:

Journal: iScience

Article Title: Convergence of root ectomycorrhizal fungal communities across Pinaceae developmental stages in temperate forests in northeastern China

doi: 10.1016/j.isci.2025.112754

Figure Lengend Snippet: Relative abundance of ectomycorrhizal fungi (EMF) at different developmental stages for four Pinaceae species at the phylum, family and genus levels Here, we show only abundant lineages (>1% of total sequences) at the family and genus levels. S, saplings; J, juveniles; A, adults.

Article Snippet: Raw sequencing data of ectomycorrhizal fungal amplicons , This paper, National Center for Biotechnology Information (NCBI) Sequence Read Archives (SRA) , BioProject number PRJNA1051329.

Techniques:

Journal: iScience

Article Title: Convergence of root ectomycorrhizal fungal communities across Pinaceae developmental stages in temperate forests in northeastern China

doi: 10.1016/j.isci.2025.112754

Figure Lengend Snippet: The alpha diversity indices of ectomycorrhizal fungi (EMF) at different developmental stages of Pinaceae hosts The differences at different developmental stages were examined via one-way analysis of variance (ANOVA) or the nonparametric Kruskal-Wallis test. Kruskal-Wallis analysis was applied for alpha diversity indices that failed to meet homogeneity of variance (Levene’s test) and normality (Kolmogorov-Smirnov test). The different letters indicate a significant difference between stands of different ages (six to ten replicates). p < 0.001 indicated by ‘∗∗∗’; p < 0.01 indicated by ‘∗∗’; p < 0.05 indicated by ‘∗’ and ns indicates nonsignificant differences.

Article Snippet: Raw sequencing data of ectomycorrhizal fungal amplicons , This paper, National Center for Biotechnology Information (NCBI) Sequence Read Archives (SRA) , BioProject number PRJNA1051329.

Techniques:

Journal: iScience

Article Title: Convergence of root ectomycorrhizal fungal communities across Pinaceae developmental stages in temperate forests in northeastern China

doi: 10.1016/j.isci.2025.112754

Figure Lengend Snippet: The ectomycorrhizal fungi (EMF) community composition at different developmental stages based on Bray-Curtis dissimilarity distances (A) Ellipses delimit 95% confidence intervals around centroids for each developmental stage. (B) Boxplots that do not share a letter are significantly different between treatments ( p < 0.05; multiple comparisons with Kruskal-Wallis tests).

Article Snippet: Raw sequencing data of ectomycorrhizal fungal amplicons , This paper, National Center for Biotechnology Information (NCBI) Sequence Read Archives (SRA) , BioProject number PRJNA1051329.

Techniques:

Journal: iScience

Article Title: Convergence of root ectomycorrhizal fungal communities across Pinaceae developmental stages in temperate forests in northeastern China

doi: 10.1016/j.isci.2025.112754

Figure Lengend Snippet: Co-occurrence patterns of developmental stage-specific ectomycorrhizal fungi (EMF) taxa (A) Co-occurrence networks of EMF taxa at different developmental stages based on Spearman correlation analysis. The ASVs in the network are visually differentiated by color-coded points: sapling stage in blue, juvenile stage in green, and adult stage in light brown. ASVs that are present across tree ages are considered ‘Common’ and are marked in gray. Each node represents an EMF ASV, and the node size is proportional to the relative abundance of an ASV. Edges represent a strong correlation (Spearman’s r > 0.6) and significance (corrected false discovery rate p < 0.01). Red strokes indicate indicator taxa identified by the random forest algorithm. The node-edge interaction information is provided in the lower right corner of the network. The numbers of node and edge are colored according to the corresponding categories. The numbers above the line indicate external associations between two groups. (B) Node-level topological features for different developmental stages. Boxplots that do not share a letter are significantly different between treatments ( p < 0.05; multiple comparisons with Kruskal-Wallis tests).

Article Snippet: Raw sequencing data of ectomycorrhizal fungal amplicons , This paper, National Center for Biotechnology Information (NCBI) Sequence Read Archives (SRA) , BioProject number PRJNA1051329.

Techniques:

Journal: iScience

Article Title: Convergence of root ectomycorrhizal fungal communities across Pinaceae developmental stages in temperate forests in northeastern China

doi: 10.1016/j.isci.2025.112754

Figure Lengend Snippet: The taxonomic indicator taxa of ectomycorrhizal fungi (EMF) at different developmental stages (A) Thirty-eight ASVs ranked by contribution to the accuracy of the model. The 10-fold cross-validation error is displayed in order of variable importance. The black dotted line represents the 38 ASVs used in the model. (B) Heatmap of the mean relative abundance of the 38 indicator ASVs at the species level at different developmental stages.

Article Snippet: Raw sequencing data of ectomycorrhizal fungal amplicons , This paper, National Center for Biotechnology Information (NCBI) Sequence Read Archives (SRA) , BioProject number PRJNA1051329.

Techniques: Biomarker Discovery