Journal: Scientific Reports

Article Title: The Arctic-Subarctic sea ice system is entering a seasonal regime: Implications for future Arctic amplification

doi: 10.1038/s41598-017-04573-0

Figure Lengend Snippet: Map of sea ice extent when Se = 1 ± 0.05 (the brown line shows the NSIDC ice edge and the turquoise patch is from the CMIP5 models). The yellow patch shows the CMIP5 distribution of sea ice extent when the total extent decreases to (1 ± 0.6) × 10 6 km 2 . In each case, the composite multi-model mean distribution is shown. The map was created using MATLAB R2016b software ( www.mathworks.com/products/matlab.html ) and the M_Map mapping package ( www.eoas.ubc.ca/~rich/map.html ).

Article Snippet: The map was created using MATLAB R2016b software ( www.mathworks.com/products/matlab.html ) and the M_Map mapping package ( www.eoas.ubc.ca/~rich/map.html ).

Techniques: Software

Journal: Cell chemical biology

Article Title: Selection of DNA Cleavage Sites by Topoisomerase II Results from Enzyme-induced Flexibility of DNA

doi: 10.1016/j.chembiol.2018.12.003

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: ​ REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial Strains Saccharomyces cerevisiae DBY745 Worland and Wang, 1989 N/A Chemicals and Recombinant Proteins mPEG-Succinimidyl Valerate, MW5000 Laysan Bio Inc. mPEG-SVA-5000 Biotin-PEG-SVA, MW5000 Laysan Bio Inc. Biotin-PEG-SVA-5000 Streptavidin Thermo Fisher S888 Cy3/Cy5 NHS Ester GE Healthcare PA13101 / PA15101 D-(+)-Glucose Sigma G7528-250G Trolox Sigma 238813-1G Glucose oxidase Sigma G2133-50KU Catalase Sigma C100-50MG Oligonucleotides Yclv1 for enzyme assay AGCGGTATCAGCAGGATGACGATGCGCGCATCGTCATCCTACAGAATCAGTTTTTTTTTTTTTTTT Integrated DNA Technology (IDT) N/A (custom) Yclv2 for enzyme assay AGCGGTATCAGCAATCTAACAATGCGCGCATTGTTAGATTACAGAATCAGTTTTTTTTTTTTTTTT Integrated DNA Technology (IDT) N/A (custom) Yclv3 for enzyme assay AGCGGTATCAGCAGGATGACGATGAGCTCATCGTCATCCTACAGAATCAGTTTTTTTTTTTTTTTT Integrated DNA Technology (IDT) N/A (custom) Yclv4 for enzyme assay AGCGGTATCAGCAGGATAACGATGAGCTCATCGTTATCCTACAGAATCAGTTTTTTTTTTTTTTTT Integrated DNA Technology (IDT) N/A (custom) Yclv5 for enzyme assay AGCGGTATCAGCAGGATAACAATGAGCTCATTGTTATCCTACAGAATCAGTTTTTTTTTTTTTTTT Integrated DNA Technology (IDT) N/A (custom) Yclv6 for enzyme assay CCCTTTCCTTCATCGATAAGCTTTAATTAAAGCTTATCGATGAAAAGGAATTTTTTTTTTTTTTTT Integrated DNA Technology (IDT) N/A (custom) Complementary oligonucleotides for sequences above, See Table S2 Integrated DNA Technology (IDT) N/A (custom) Oligonucleotides for cyclization assay, See Table S2 Integrated DNA Technology (IDT) N/A (custom) Software and Algorithms IDL Exelis Visual Information Solutions https://www.harrisgeospatial.com/Software-Technology/IDL Matlab R2017b Mathworks https://www.mathworks.com/products/matlab.html OriginPro 9.1 OriginLabs https://www.originlab.com/Origin smFRET data acquisition program Taekjip Ha (Johns Hopkins Univ.) http://ha.med.jhmi.edu/resources IDL scripts (custom) This work N/A Matlab scripts (custom) This work N/A Open in a separate window KEY RESOURCES TABLE The regulation of the DNA cleavage reaction by topoisomerase II is an essential for cell survival and is required for proper chromosomal structure and segregation.

Techniques: Recombinant, Enzymatic Assay, Software

Journal: Scientific Reports

Article Title: Facile fabrication of amino-functionalized MIL-68(Al) metal–organic framework for effective adsorption of arsenate (As(V))

doi: 10.1038/s41598-022-16038-0

Figure Lengend Snippet: Output of GA method for optimization of independent variables in As(V) adsorption process on amino-MIL-68(Al). MATLAB R2013a software was used to create this figure ( https://www.mathworks.com/products/matlab.html ).

Article Snippet: Design-Expert v13 ( https://www.statease.com/docs/v13/ ) and MATLAB R2013a ( https://www.mathworks.com/products/matlab.html ) software were used to perform CCD and GA in this study, respectively.

Techniques: Adsorption, Software

Journal: Scientific Reports

Article Title: Interannual monsoon wind variability as a key driver of East African small pelagic fisheries

doi: 10.1038/s41598-020-70275-9

Figure Lengend Snippet: An Advective impact along the NEMC path of nutrients rich and cold waters from the Madagascar northern tip to the Tanzanian coast during Sep02 and the climatology (1997–2015). A cross-section (T0) from 39 to 65°E of modelled temperature in °C ( a , d ), Chl-a in mg/m 3 ( b , e ) and DIN in mmol/m 3 ( c,f ) is displayed along the latitude line 10° S as indicated with the black line on panel ( g ). The MLD in m of Sep02 and the climatology are represented by the black solid and dashed lines respectively on panel ( b ). The 2 mmol/m 3 isopleth is highlighted with a thick black line on panels ( c ) and ( f ). ( g ) Trajectories of virtual particles backtracked from the East African coastal zones (marked with light yellow dots) in Sep02 and Sep11, back to their upstream sources in the surface Indian Ocean up to 100 days prior. Colours denote the ‘connectivity timescale’—i.e. the minimum amount of time, in days, required for waters from a given area to reach any of the end points on the East African coast. Note that reds/oranges paths are plotted on top of blues/purples to highlight the most rapid advective pathways in both cases. Maps on panel (g) was created by the authors using MATLAB software vR2013a (see https://uk.mathworks.com/videos/r2013a-release-highlights-75269.html and https://uk.mathworks.com/products/matlab.html ).

Article Snippet: Maps on panel (g) was created by the authors using MATLAB software vR2013a (see https://uk.mathworks.com/videos/r2013a-release-highlights-75269.html and https://uk.mathworks.com/products/matlab.html ).

Techniques: Northern Blot, Software