phrap Search Results


phred and phrap implemented in codoncode aligner  (CodonCode corporation)
90
CodonCode corporation phred and phrap implemented in codoncode aligner
Phred And Phrap Implemented In Codoncode Aligner, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/phred and phrap implemented in codoncode aligner/product/CodonCode corporation
Average 90 stars, based on 1 article reviews
phred and phrap implemented in codoncode aligner - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
phrap assembly tool  (CodonCode corporation)
90
CodonCode corporation phrap assembly tool
Phrap Assembly Tool, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/phrap assembly tool/product/CodonCode corporation
Average 90 stars, based on 1 article reviews
phrap assembly tool - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
phrap algorithm  (MacVector inc)
90
MacVector inc phrap algorithm
Phrap Algorithm, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/phrap algorithm/product/MacVector inc
Average 90 stars, based on 1 article reviews
phrap algorithm - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
phred/phrap software  (CodonCode corporation)
90
CodonCode corporation phred/phrap software
Phred/Phrap Software, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/phred/phrap software/product/CodonCode corporation
Average 90 stars, based on 1 article reviews
phred/phrap software - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
phred/phrap/consed  (InforMax Inc)
90
InforMax Inc phred/phrap/consed
Phred/Phrap/Consed, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/phred/phrap/consed/product/InforMax Inc
Average 90 stars, based on 1 article reviews
phred/phrap/consed - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
the phred/phrap/consed package  (CLC Bio)
90
CLC Bio the phred/phrap/consed package
The Phred/Phrap/Consed Package, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/the phred/phrap/consed package/product/CLC Bio
Average 90 stars, based on 1 article reviews
the phred/phrap/consed package - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
phrap  (CodonCode corporation)
90
CodonCode corporation phrap
Phrap, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/phrap/product/CodonCode corporation
Average 90 stars, based on 1 article reviews
phrap - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
contig assembly phrap  (PrimerDesign Inc)
90
PrimerDesign Inc contig assembly phrap
Illustration of Gap Mapper algorithm for <t>contig</t> calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the <t>Phrap</t> <t>assembly</t> process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.
Contig Assembly Phrap, supplied by PrimerDesign Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/contig assembly phrap/product/PrimerDesign Inc
Average 90 stars, based on 1 article reviews
contig assembly phrap - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
phred/phrap/consed software package  (PrimerDesign Inc)
90
PrimerDesign Inc phred/phrap/consed software package
Illustration of Gap Mapper algorithm for <t>contig</t> calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the <t>Phrap</t> <t>assembly</t> process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.
Phred/Phrap/Consed Software Package, supplied by PrimerDesign Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/phred/phrap/consed software package/product/PrimerDesign Inc
Average 90 stars, based on 1 article reviews
phred/phrap/consed software package - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
macvector 12.6 phrap  (MacVector inc)
90
MacVector inc macvector 12.6 phrap
Illustration of Gap Mapper algorithm for <t>contig</t> calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the <t>Phrap</t> <t>assembly</t> process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.
Macvector 12.6 Phrap, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/macvector 12.6 phrap/product/MacVector inc
Average 90 stars, based on 1 article reviews
macvector 12.6 phrap - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
codoncode phred/phrap  (CodonCode corporation)
90
CodonCode corporation codoncode phred/phrap
Illustration of Gap Mapper algorithm for <t>contig</t> calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the <t>Phrap</t> <t>assembly</t> process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.
Codoncode Phred/Phrap, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/codoncode phred/phrap/product/CodonCode corporation
Average 90 stars, based on 1 article reviews
codoncode phred/phrap - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier
ringer-phrap assembly  (Celera)
90
Celera ringer-phrap assembly
Illustration of Gap Mapper algorithm for <t>contig</t> calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the <t>Phrap</t> <t>assembly</t> process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.
Ringer Phrap Assembly, supplied by Celera, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/ringer-phrap assembly/product/Celera
Average 90 stars, based on 1 article reviews
ringer-phrap assembly - by Bioz Stars, 2026-06
90/100 stars
  Buy from Supplier

Image Search Results


Illustration of Gap Mapper algorithm for contig calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the Phrap assembly process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.

Journal: BMC Bioinformatics

Article Title: A novel approach to sequence validating protein expression clones with automated decision making

doi: 10.1186/1471-2105-8-198

Figure Lengend Snippet: Illustration of Gap Mapper algorithm for contig calculation . Clone reads deemed to be of sufficient quality are supplemented by a pseudo read generated from the reference sequence with all bases set to a confidence score of 19 and submitted to the Phrap assembly process. The alignment matrix of clone reads is retrieved from Phrap output in order to determine the positions of each read relative to the reference sequence. Consensus sequences and confidence scores are computed for the various contigs using a naïve Bayes classifier, and the results are reported. The calculated contigs are trimmed to drop low confidence tails.

Article Snippet: Some basic sequencing programs handle pre-processing of sequence trace files, base calling [ ], quality clipping, vector trimming and removal [ ], contig assembly (phrap [ ] or TIGR assembler [ ]) and primer design [ ].

Techniques: Generated, Sequencing