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Image Search Results
Journal: Oncotarget
Article Title: Mapping heterogeneity in patient-derived melanoma cultures by single-cell RNA-seq
doi: 10.18632/oncotarget.13666
Figure Lengend Snippet: ( A ) Gene expression levels of 4 cyclin-dependent kinases (CDK1, CDK2, CDK4 and CDK6) are analyzed for each of the 3 identified main groups. Data are given as standard box plots. CDK2 and CDK4 are consistently highly expressed in all groups. Positions of each CDK gene are shown on the mean SOM expression landscape indicated by arrows. ( B ) Growth inhibition curves are shown for treatments of a patient-derived melanoma short-term culture using inhibitors directed against CDK2 (purvanolol), CDK4 palbociclib, activated BRAF (vemurafenib), ERK1/2 (SCH772984), and MEK1/2 (cobimetinib).
Article Snippet: The following small molecule inhibitors were used:
Techniques: Gene Expression, Expressing, Inhibition, Derivative Assay
Journal: bioRxiv
Article Title: PI3K-AKT activation determines oncogenic RAS-induced hypertranscription and replication stress
doi: 10.64898/2026.03.16.711577
Figure Lengend Snippet: (A) Experimental setup for steady-state RNA sequencing. (B) Numbers of up- or downregulated genes (log2-fold change >1) after 24 or 48 h HRAS G12V or KRAS G12V induction. (C) Numbers of unique and shared up-regulated genes after HRAS G12V or KRAS G12V induction. (D) Functional enrichment analysis (gene ontology, biological process) of genes downregulated 48 h after HRAS G12V or KRAS G12V induction. (E) Functional enrichment analysis (gene ontology, biological process) of genes upregulated 48 h after HRAS G12V or KRAS G12V induction. (G) Log2 fold-change in hallmark E2F target gene expression after HRAS G12V or KRAS G12V induction. (H) E2F1 expression (RNAseq, DEseq2) after HRAS G12V or KRAS G12V induction. N=3. (I) Log2 fold-change in hallmark MYC target gene expression after HRAS G12V or KRAS G12V induction. (J) MYC expression (RNAseq, DEseq2) after HRAS G12V or KRAS G12V induction. N=3. (K) Protein levels of pRB1 and α-TUBULIN after oncogene induction for the times indicated. (L) S phase percentage after HRAS G12V induction as determined by EdU labelling and flow cytometry. N=4. (M) S phase percentage after KRAS G12V induction. N=4. (N) S phase percentage after BRAF V600E induction. N=4. (O) Experimental setup for CDK4/6 inhibitor (CDK4/6i) treatment and release. (P) S phase percentage after HRAS G12V induction and treatment with CDK4/6i. N=2. (Q) Nuclear EU intensity after HRAS G12V induction and release from CDK4/6i. N=3. (R) Average replication fork speeds after HRAS G12V induction and release from CDK4/6i. N=3. Means +/-SEM (bars) are shown with 2-way ANOVA or mixed effects analysis.
Article Snippet: Small molecule inhibitors and activators were sourced as follows: MEK inhibitor PD0325901 (1 μM) and
Techniques: RNA Sequencing, Functional Assay, Targeted Gene Expression, Expressing, RNA sequencing, Flow Cytometry