jmol Search Results


jmol  (SourceForge net)
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Jmol, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol 3d engine  (SourceForge net)
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Jmol 3d Engine, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol 14.3.15  (SourceForge net)
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SourceForge net jmol 14.3.15
Most stable structures of ( A ) Pd 18 OD − , ( B ) Pd 18 D 2 O and ( C ) Pd 18 OD − D + at B3LYP level of theory. In each system, oxygen and deuterium atoms are shown by red and white color spheres and largest spheres are the Pd atoms. The images are made by using <t>Jmol</t> 14.3.15 (jmol.sourceforge.net).
Jmol 14.3.15, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol applet  (SourceForge net)
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Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded <t>Jmol</t> <t>applet</t> allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.
Jmol Applet, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol visualization software  (SourceForge net)
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Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded <t>Jmol</t> <t>applet</t> allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.
Jmol Visualization Software, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol bioinformatic tool  (SourceForge net)
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SourceForge net jmol bioinformatic tool
Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded <t>Jmol</t> <t>applet</t> allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.
Jmol Bioinformatic Tool, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol version 14.2.7  (SourceForge Inc)
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Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded <t>Jmol</t> <t>applet</t> allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.
Jmol Version 14.2.7, supplied by SourceForge Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol  (Dice Holdings Inc)
90
Dice Holdings Inc jmol
Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded <t>Jmol</t> <t>applet</t> allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.
Jmol, supplied by Dice Holdings Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol users list  (SourceForge net)
90
SourceForge net jmol users list
Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded <t>Jmol</t> <t>applet</t> allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.
Jmol Users List, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol applet  (Chemed Corporation)
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Chemed Corporation jmol applet
Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded <t>Jmol</t> <t>applet</t> allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.
Jmol Applet, supplied by Chemed Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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computer application jmol  (SourceForge net)
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SourceForge net computer application jmol
Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded <t>Jmol</t> <t>applet</t> allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.
Computer Application Jmol, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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jmol  (Prezi Inc)
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Prezi Inc jmol
Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded <t>Jmol</t> <t>applet</t> allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.
Jmol, supplied by Prezi Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Most stable structures of ( A ) Pd 18 OD − , ( B ) Pd 18 D 2 O and ( C ) Pd 18 OD − D + at B3LYP level of theory. In each system, oxygen and deuterium atoms are shown by red and white color spheres and largest spheres are the Pd atoms. The images are made by using Jmol 14.3.15 (jmol.sourceforge.net).

Journal: Scientific Reports

Article Title: Experimental and theoretical validation for transmutation of palladium at electrochemical interfaces

doi: 10.1038/s41598-024-70597-y

Figure Lengend Snippet: Most stable structures of ( A ) Pd 18 OD − , ( B ) Pd 18 D 2 O and ( C ) Pd 18 OD − D + at B3LYP level of theory. In each system, oxygen and deuterium atoms are shown by red and white color spheres and largest spheres are the Pd atoms. The images are made by using Jmol 14.3.15 (jmol.sourceforge.net).

Article Snippet: The images are made by using Jmol 14.3.15 (jmol.sourceforge.net).

Techniques:

Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded Jmol applet allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.

Journal: Nucleic Acids Research

Article Title: DrugScore PPI webserver: fast and accurate in silico alanine scanning for scoring protein–protein interactions

doi: 10.1093/nar/gkq471

Figure Lengend Snippet: Screenshot of the results page for computational alanine scanning on the structure of interleukin-2 complexed with its alpha receptor (PDB code: 1Z92). ( A ) A warning is issued because of missing residues and/or atoms in the PDB file. Missing residues and/or atoms can have a pronounced impact on the computed ΔΔ G values. ( B ) Links to a PDF file containing a table and a bar plot of the alanine scanning results and to a PDB file with predicted relative binding free energy differences in the B-factor column. ( C ) An embedded Jmol applet allows visualization of the annotated complex structure. Residues in the interface are represented by a color code according to their sidechains' contribution to the binding free energy, as defined in the color scale below. The chain(s) of the protein for which residue contributions were calculated is (are) colored in white; the corresponding chain(s) of the binding partner is (are) colored in magenta.

Article Snippet: The visualization is also possible in the web browser using the Jmol applet ( http://jmol.sourceforge.net ).

Techniques: Binding Assay, Residue