ilastik Search Results


ilastik  (Meso Scale Diagnostics LLC)
90
Meso Scale Diagnostics LLC ilastik
Quality control and output (A) Overlay of automatically detected cells and corresponding image channel for visual validation of object detection. Shown is data of the example dataset (ChatCre;Ai14tdTomato); green: channel 1 (555nm), red: objects detected using <t>Ilastik.</t> (B) Overlay of the atlas template (green) and the experimental example dataset (red, Neurotrace channel) after atlas alignment. (C) SpinalJ output graphs like this heatmap montage of cell densities within channel 1 of the example dataset provide a quick visual summary of the data. Scale: 500μm.
Ilastik, supplied by Meso Scale Diagnostics LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/ilastik/product/Meso Scale Diagnostics LLC
Average 90 stars, based on 1 article reviews
ilastik - by Bioz Stars, 2026-03
90/100 stars
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ilastik pixel classification workflow  (Johns Hopkins HealthCare)
90
Johns Hopkins HealthCare ilastik pixel classification workflow
Quality control and output (A) Overlay of automatically detected cells and corresponding image channel for visual validation of object detection. Shown is data of the example dataset (ChatCre;Ai14tdTomato); green: channel 1 (555nm), red: objects detected using <t>Ilastik.</t> (B) Overlay of the atlas template (green) and the experimental example dataset (red, Neurotrace channel) after atlas alignment. (C) SpinalJ output graphs like this heatmap montage of cell densities within channel 1 of the example dataset provide a quick visual summary of the data. Scale: 500μm.
Ilastik Pixel Classification Workflow, supplied by Johns Hopkins HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/ilastik pixel classification workflow/product/Johns Hopkins HealthCare
Average 90 stars, based on 1 article reviews
ilastik pixel classification workflow - by Bioz Stars, 2026-03
90/100 stars
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ilastik integration  (KNIME GmbH)
90
KNIME GmbH ilastik integration
Quality control and output (A) Overlay of automatically detected cells and corresponding image channel for visual validation of object detection. Shown is data of the example dataset (ChatCre;Ai14tdTomato); green: channel 1 (555nm), red: objects detected using <t>Ilastik.</t> (B) Overlay of the atlas template (green) and the experimental example dataset (red, Neurotrace channel) after atlas alignment. (C) SpinalJ output graphs like this heatmap montage of cell densities within channel 1 of the example dataset provide a quick visual summary of the data. Scale: 500μm.
Ilastik Integration, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/ilastik integration/product/KNIME GmbH
Average 90 stars, based on 1 article reviews
ilastik integration - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
ilastik  (Matisse Pharmaceuticals)
90
Matisse Pharmaceuticals ilastik
Quality control and output (A) Overlay of automatically detected cells and corresponding image channel for visual validation of object detection. Shown is data of the example dataset (ChatCre;Ai14tdTomato); green: channel 1 (555nm), red: objects detected using <t>Ilastik.</t> (B) Overlay of the atlas template (green) and the experimental example dataset (red, Neurotrace channel) after atlas alignment. (C) SpinalJ output graphs like this heatmap montage of cell densities within channel 1 of the example dataset provide a quick visual summary of the data. Scale: 500μm.
Ilastik, supplied by Matisse Pharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/ilastik/product/Matisse Pharmaceuticals
Average 90 stars, based on 1 article reviews
ilastik - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
ilastik  (KNIME GmbH)
90
KNIME GmbH ilastik
Quality control and output (A) Overlay of automatically detected cells and corresponding image channel for visual validation of object detection. Shown is data of the example dataset (ChatCre;Ai14tdTomato); green: channel 1 (555nm), red: objects detected using <t>Ilastik.</t> (B) Overlay of the atlas template (green) and the experimental example dataset (red, Neurotrace channel) after atlas alignment. (C) SpinalJ output graphs like this heatmap montage of cell densities within channel 1 of the example dataset provide a quick visual summary of the data. Scale: 500μm.
Ilastik, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/ilastik/product/KNIME GmbH
Average 90 stars, based on 1 article reviews
ilastik - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
open-source software platforms ilastik  (KNIME GmbH)
90
KNIME GmbH open-source software platforms ilastik
Quality control and output (A) Overlay of automatically detected cells and corresponding image channel for visual validation of object detection. Shown is data of the example dataset (ChatCre;Ai14tdTomato); green: channel 1 (555nm), red: objects detected using <t>Ilastik.</t> (B) Overlay of the atlas template (green) and the experimental example dataset (red, Neurotrace channel) after atlas alignment. (C) SpinalJ output graphs like this heatmap montage of cell densities within channel 1 of the example dataset provide a quick visual summary of the data. Scale: 500μm.
Open Source Software Platforms Ilastik, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/open-source software platforms ilastik/product/KNIME GmbH
Average 90 stars, based on 1 article reviews
open-source software platforms ilastik - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier

Image Search Results


Quality control and output (A) Overlay of automatically detected cells and corresponding image channel for visual validation of object detection. Shown is data of the example dataset (ChatCre;Ai14tdTomato); green: channel 1 (555nm), red: objects detected using Ilastik. (B) Overlay of the atlas template (green) and the experimental example dataset (red, Neurotrace channel) after atlas alignment. (C) SpinalJ output graphs like this heatmap montage of cell densities within channel 1 of the example dataset provide a quick visual summary of the data. Scale: 500μm.

Journal: STAR Protocols

Article Title: SpineRacks and SpinalJ for efficient analysis of neurons in a 3D reference atlas of the mouse spinal cord

doi: 10.1016/j.xpro.2021.100897

Figure Lengend Snippet: Quality control and output (A) Overlay of automatically detected cells and corresponding image channel for visual validation of object detection. Shown is data of the example dataset (ChatCre;Ai14tdTomato); green: channel 1 (555nm), red: objects detected using Ilastik. (B) Overlay of the atlas template (green) and the experimental example dataset (red, Neurotrace channel) after atlas alignment. (C) SpinalJ output graphs like this heatmap montage of cell densities within channel 1 of the example dataset provide a quick visual summary of the data. Scale: 500μm.

Article Snippet: For binary thresholding of axons/dendrites use the threshold tool ( CTRL+SHIFT+T ) to determine the minimum threshold value to be used. c. Training Ilastik for machine learning based mesoscale mapping / cell detection (19 k.iii): We recommend using Ilastik for best results, especially when analyzing densely labeled neurons, although other cell detection methods are provided.

Techniques: Control, Biomarker Discovery

List of files included in example dataset

Journal: STAR Protocols

Article Title: SpineRacks and SpinalJ for efficient analysis of neurons in a 3D reference atlas of the mouse spinal cord

doi: 10.1016/j.xpro.2021.100897

Figure Lengend Snippet: List of files included in example dataset

Article Snippet: For binary thresholding of axons/dendrites use the threshold tool ( CTRL+SHIFT+T ) to determine the minimum threshold value to be used. c. Training Ilastik for machine learning based mesoscale mapping / cell detection (19 k.iii): We recommend using Ilastik for best results, especially when analyzing densely labeled neurons, although other cell detection methods are provided.

Techniques: Staining, Imaging, Transformation Assay, Cell Analysis, Blocking Assay