Journal: World Journal of Surgical Oncology

Article Title: Evaluation of the expression and clinical value of lncRNA AC010761.9 in human gastric adenocarcinoma

doi: 10.1186/s12957-017-1289-y

Figure Lengend Snippet: Relationships between lncRNA AC010761.9 expression (ΔCt value) and patient clinical pathologic factors and serum tumor markers

Article Snippet: The results from the Human LncRNA Expression Profile Microarray V3.0 (Arraystar, Rockville, MD, USA) were obtained from the previous work and completed by Kang Chen Bio-tech (Shanghai, China) based on the manufacturer’s instructions [ ].

Techniques: Expressing

Journal: World Journal of Surgical Oncology

Article Title: Evaluation of the expression and clinical value of lncRNA AC010761.9 in human gastric adenocarcinoma

doi: 10.1186/s12957-017-1289-y

Figure Lengend Snippet: LncRNA AC010761.9 was over-expressed in GA tissues by lncRNA expression chip assay. T cancer tissues, N matched non-cancer tissues. Cluster analyses from the six GA and their paired non-GA tissues lncRNA chip results showed that LncRNA AC010761.9 was over-expressed in GA tissues compared with that in the paired non-GA tissues (mean increased fold = 2.01 times, p < 0.05)

Article Snippet: The results from the Human LncRNA Expression Profile Microarray V3.0 (Arraystar, Rockville, MD, USA) were obtained from the previous work and completed by Kang Chen Bio-tech (Shanghai, China) based on the manufacturer’s instructions [ ].

Techniques: Expressing

Journal: World Journal of Surgical Oncology

Article Title: Evaluation of the expression and clinical value of lncRNA AC010761.9 in human gastric adenocarcinoma

doi: 10.1186/s12957-017-1289-y

Figure Lengend Snippet: LncRNA AC010761.9 was over-expressed in GA tissues by quantified RT-PCR measurement. T cancer tissues, N matched non-cancer tissues. T versus N, p < 0.01. The data were from 145 cases of GA. The higher the ΔCt values, the lower the lncRNA AC010761.9 expression. Data were obtained from three independent tests

Article Snippet: The results from the Human LncRNA Expression Profile Microarray V3.0 (Arraystar, Rockville, MD, USA) were obtained from the previous work and completed by Kang Chen Bio-tech (Shanghai, China) based on the manufacturer’s instructions [ ].

Techniques: Reverse Transcription Polymerase Chain Reaction, Expressing

Journal: World Journal of Surgical Oncology

Article Title: Evaluation of the expression and clinical value of lncRNA AC010761.9 in human gastric adenocarcinoma

doi: 10.1186/s12957-017-1289-y

Figure Lengend Snippet: LncRNA AC010761.9 was over-expressed in GA cell lines. The data were from three GA cell lines (MGC-803, BGC-823, and SGC-7901) and control cells (normal gastric cell line [GES-1]). GA cells versus control cells (all p < 0.05). The higher the ΔCt values, the lower the lncRNA AC010761.9 expression. Data were obtained from three independent tests

Article Snippet: The results from the Human LncRNA Expression Profile Microarray V3.0 (Arraystar, Rockville, MD, USA) were obtained from the previous work and completed by Kang Chen Bio-tech (Shanghai, China) based on the manufacturer’s instructions [ ].

Techniques: Control, Expressing

Journal: World Journal of Surgical Oncology

Article Title: Evaluation of the expression and clinical value of lncRNA AC010761.9 in human gastric adenocarcinoma

doi: 10.1186/s12957-017-1289-y

Figure Lengend Snippet: Relationships between lncRNA AC010761.9 expression (ΔCt value) and patient clinical pathologic factors analyzed by univariate and multivariate

Article Snippet: The results from the Human LncRNA Expression Profile Microarray V3.0 (Arraystar, Rockville, MD, USA) were obtained from the previous work and completed by Kang Chen Bio-tech (Shanghai, China) based on the manufacturer’s instructions [ ].

Techniques: Expressing

Journal: World Journal of Surgical Oncology

Article Title: Evaluation of the expression and clinical value of lncRNA AC010761.9 in human gastric adenocarcinoma

doi: 10.1186/s12957-017-1289-y

Figure Lengend Snippet: The expression of lncRNA AC010761.9 showed a positive correlation with the expression of TRAF4 mRNA. r = 0.385 and p < 0.01 were obtained by Pearson correlation analysis

Article Snippet: The results from the Human LncRNA Expression Profile Microarray V3.0 (Arraystar, Rockville, MD, USA) were obtained from the previous work and completed by Kang Chen Bio-tech (Shanghai, China) based on the manufacturer’s instructions [ ].

Techniques: Expressing

Journal: Journal of Cellular and Molecular Medicine

Article Title: ALKBH5‐mediated m6A modification of lncRNA KCNQ1OT1 triggers the development of LSCC via upregulation of HOXA9

doi: 10.1111/jcmm.17091

Figure Lengend Snippet: Results of the m6A‐lncRNA expression profiles in LSCC. (A) Hierarchical clustering for lncRNAs with differential ‘m6A quantity’. The red‐green gradient colour scheme indicates the high and low m6A methylation relative quantity as referenced in the Color Key. The top dendrogram shows the tightness between the samples. Sample group members are represented by colour bars above the heat map. (B) Volcano plot. X‐axis: log2 (fold change); Y‐axis: ‐log10 ( P ‐value). The vertical green lines correspond to 1.2‐fold up and down, and the horizontal green line represents 0.05 p ‐value. The red dot in the figure represents the high m6A methylation lncRNAs, and the green dot represents the low m6A methylation lncRNAs. (C) Pie chart shows 33 high m6A methylation lncRNAs and 9 low m6A methylation lncRNAs

Article Snippet: The cRNAs were combined together and hybridized onto Arraystar Human lncRNA Epitranscriptomic Microarray (8x60K, Arraystar).

Techniques: Expressing, Methylation

Journal: Aging (Albany NY)

Article Title: Calycosin stimulates the proliferation of endothelial cells, but not breast cancer cells, via a feedback loop involving RP11-65M17.3, BRIP1 and ERα

doi: 10.18632/aging.202641

Figure Lengend Snippet: The effects of calycosin treatment on lncRNA profiles in HUVECs.

Article Snippet: Labeled cDNA was subjected to hybridization using the Human lncRNA OneArray Plus microarray (Phalanx Biotech Group, Taiwan), followed by scanning using an Agilent scanner (Agilent Technologies, USA).

Techniques:

Journal: bioRxiv

Article Title: Noncoding RNA’s competing endogenous gene pair as motif in serous ovarian cancer

doi: 10.1101/2022.04.04.486923

Figure Lengend Snippet: Functional analysis of the cceGPs. A) The 18 cceGPs or gene pair-circRNA motifs in SOC. B) Heatmap illustrating the expression abundance of circRNAs. C) Enriched functions of the 18 cceGPs in Reactome. D) Enriched functions of the 18 cceGPs in GO. Yellow node denotes functional category while grey node represents gene. E, F) Expression abundance of PRC1 and BBS4 in normal controls and SOCs. G, H) Correlations between circHUNK and PRC1 (BBS4 ) in SOCs. I) PRC1 -circHUNK- BBS4 as an example of cceGPs relationship in SOC progress.

Article Snippet: We performed Arraystar Human LncRNA Microarray V2.0 and Arraystar Human circRNA Array V2.0 analyses on all 16 samples.

Techniques: Functional Assay, Expressing