haa2 Search Results


haa2  (ATCC)
88
ATCC haa2
Haa2, supplied by ATCC, used in various techniques. Bioz Stars score: 88/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/haa2/product/ATCC
Average 88 stars, based on 1 article reviews
haa2 - by Bioz Stars, 2026-03
88/100 stars
  Buy from Supplier
rhodopseudomonas palustris haa2  (Taxon Biosciences)
90
Taxon Biosciences rhodopseudomonas palustris haa2
Genome features of <t> Rhodopseudomonas palustris strains. </t>
Rhodopseudomonas Palustris Haa2, supplied by Taxon Biosciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rhodopseudomonas palustris haa2/product/Taxon Biosciences
Average 90 stars, based on 1 article reviews
rhodopseudomonas palustris haa2 - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
nhases from rhodopseudomonas palustris haa2 (haa2)  (Twist Bioscience)
90
Twist Bioscience nhases from rhodopseudomonas palustris haa2 (haa2)
Genome features of <t> Rhodopseudomonas palustris strains. </t>
Nhases From Rhodopseudomonas Palustris Haa2 (Haa2), supplied by Twist Bioscience, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/nhases from rhodopseudomonas palustris haa2 (haa2)/product/Twist Bioscience
Average 90 stars, based on 1 article reviews
nhases from rhodopseudomonas palustris haa2 (haa2) - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier

Image Search Results


Genome features of Rhodopseudomonas palustris strains.

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Genome features of Rhodopseudomonas palustris strains.

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques:

Binary accessions generated for Pfam Categories in six Rhodopseudomonas palustris genomes.

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Binary accessions generated for Pfam Categories in six Rhodopseudomonas palustris genomes.

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques: Generated

Functional categories of genome-unique Pfam domain annotations for genomes of six Rhodopseudomonas palustris strains. <xref ref-type= * " width="100%" height="100%">

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Functional categories of genome-unique Pfam domain annotations for genomes of six Rhodopseudomonas palustris strains. *

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques: Functional Assay, Modification, Control, Transduction

Visual analytics resource for functional annotation analytics of six Rhodopseudomonas palustris genomes. The view illustrates selection of options to display on Pfam categories present in only strains BisB5 and CGA009. Five Pfam categories were identified including PF00230 (MIP—Major Intrinsic Protein family) the domain for water and/or glycerol transport. To achieve this view, the filters for only strains BisB5 and CGA009 were set to 1 equivalent to the 6-digit binary accession 001100. The position of the digit corresponds to the column number for each strain. Thus, the annotation of BisB5 and CGA009 are represented by digits 3 and 4 in the binary accession. Web page for interactive view: http://public.tableausoftware.com/views/pfam2rpalustris/pfamviz .

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Visual analytics resource for functional annotation analytics of six Rhodopseudomonas palustris genomes. The view illustrates selection of options to display on Pfam categories present in only strains BisB5 and CGA009. Five Pfam categories were identified including PF00230 (MIP—Major Intrinsic Protein family) the domain for water and/or glycerol transport. To achieve this view, the filters for only strains BisB5 and CGA009 were set to 1 equivalent to the 6-digit binary accession 001100. The position of the digit corresponds to the column number for each strain. Thus, the annotation of BisB5 and CGA009 are represented by digits 3 and 4 in the binary accession. Web page for interactive view: http://public.tableausoftware.com/views/pfam2rpalustris/pfamviz .

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques: Functional Assay, Selection

Clustering of Rhodopseudomonas palustris genomes based on Pfam domain annotation of genes. Proximity of grouping indicates the relative degree of similarity of genomes to each other. The genome tree illustrating the relationship between genomes and Pfam domains was generated using Genome Clustering Tool on the Integrated Microbial Genomes (IMG) system ( http://img.jgi.doe.gov/ ).

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Clustering of Rhodopseudomonas palustris genomes based on Pfam domain annotation of genes. Proximity of grouping indicates the relative degree of similarity of genomes to each other. The genome tree illustrating the relationship between genomes and Pfam domains was generated using Genome Clustering Tool on the Integrated Microbial Genomes (IMG) system ( http://img.jgi.doe.gov/ ).

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques: Generated

Relationship between six Rhodopseudomonas palustris genomes for Pfam annotations defined by presence in genomes. The hierarchical clustering of genomes (horizontal axis) and Pfam domains (vertical axis) are shown for Pfam domains present in 2, 3, 4 and 5 genomes. Data for clustering was obtained from matrix of binary patterns representing presence or absence of 2,255 Pfam domains in Rhodopseudomonas palustris genomes. The number of outermost branches is equivalent to the number of clusters. Red and black indicate presence and absence respectively of Pfam annotation in a genome.

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Relationship between six Rhodopseudomonas palustris genomes for Pfam annotations defined by presence in genomes. The hierarchical clustering of genomes (horizontal axis) and Pfam domains (vertical axis) are shown for Pfam domains present in 2, 3, 4 and 5 genomes. Data for clustering was obtained from matrix of binary patterns representing presence or absence of 2,255 Pfam domains in Rhodopseudomonas palustris genomes. The number of outermost branches is equivalent to the number of clusters. Red and black indicate presence and absence respectively of Pfam annotation in a genome.

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques:

Listing of unique Pfam domain annotations for finished genomes of six Rhodopseudomonas palustris strains.

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Listing of unique Pfam domain annotations for finished genomes of six Rhodopseudomonas palustris strains.

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques: Avidin-Biotin Assay, Plasmid Preparation, CRISPR

Visual analytic view of functional categories for strain-specific Pfam domain annotation of six Rhodopseudomonas palustris genomes. The view allows for user-interaction to select search fields including functional categories defined Cluster of Orthologous Groups (COGs) of Proteins. Interactive version of the figure can be found at http://public.tableausoftware.com/views/rhodo_palustris/uniquepfam2strain .

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Visual analytic view of functional categories for strain-specific Pfam domain annotation of six Rhodopseudomonas palustris genomes. The view allows for user-interaction to select search fields including functional categories defined Cluster of Orthologous Groups (COGs) of Proteins. Interactive version of the figure can be found at http://public.tableausoftware.com/views/rhodo_palustris/uniquepfam2strain .

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques: Functional Assay

Multiple sequence alignment of orthologous aquaporins from Agrobacterium tumerfaciens str. C58 (PDB ID: 3LLQ) as well as strains CGA009 and BisB5 of Rhodopseudomonas palustris . RPA2485 from CGA009 and RPD_2467 from BisB5 are 240 aa long. Information on the match of the residues is placed below each block of residues: “*”, “:” and “.” indicate that residues in column are identical, conserved substitutions and semi-conserved substitutions respectively. Below the symbols for sequence match, “=” indicates the two Asparagine-Proline-Alanine (NPA) motifs (residues 64 to 66; residues 186 to 188) and “^” indicates the residues for the aromatic/Arginine (ar/R) region (F44, H174, T183 and R189). The percent sequence identities between the 3LLQ and RPD_2467 and RPA2485 are 67.6% and 66.7% respectively.

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Multiple sequence alignment of orthologous aquaporins from Agrobacterium tumerfaciens str. C58 (PDB ID: 3LLQ) as well as strains CGA009 and BisB5 of Rhodopseudomonas palustris . RPA2485 from CGA009 and RPD_2467 from BisB5 are 240 aa long. Information on the match of the residues is placed below each block of residues: “*”, “:” and “.” indicate that residues in column are identical, conserved substitutions and semi-conserved substitutions respectively. Below the symbols for sequence match, “=” indicates the two Asparagine-Proline-Alanine (NPA) motifs (residues 64 to 66; residues 186 to 188) and “^” indicates the residues for the aromatic/Arginine (ar/R) region (F44, H174, T183 and R189). The percent sequence identities between the 3LLQ and RPD_2467 and RPA2485 are 67.6% and 66.7% respectively.

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques: Sequencing, Blocking Assay

Sequence and predicted topologies for aquaporin of Rhodopseudomonas palustris CGA009. Graphic was generated with TOPCONS ( http://topcons.net/ ), which provides a consensus prediction of membrane protein topology from 5 topologies. Notes: Alphabets represent the predicted location of the residue in the protein. Abbreviations: M, membrane; i, on the inside of the membrane; or o, on the outside of the membrane.

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Sequence and predicted topologies for aquaporin of Rhodopseudomonas palustris CGA009. Graphic was generated with TOPCONS ( http://topcons.net/ ), which provides a consensus prediction of membrane protein topology from 5 topologies. Notes: Alphabets represent the predicted location of the residue in the protein. Abbreviations: M, membrane; i, on the inside of the membrane; or o, on the outside of the membrane.

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques: Sequencing, Generated, Membrane, Residue

Homology model of aquaporins encoded in two strains of Rhodopseudomonas palustris . ( A ) Superposition of theoretical models of R. palustris water channel proteins from BisB5 (magenta) and CGA009 (cyan) strains. Molecular surfaces (green mesh) clearly illustrate the role of residues F44, H174, T183 and R189 in conferring selectivity towards water molecules in BisB5 ( B ) and CGA009 ( C ).

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Homology model of aquaporins encoded in two strains of Rhodopseudomonas palustris . ( A ) Superposition of theoretical models of R. palustris water channel proteins from BisB5 (magenta) and CGA009 (cyan) strains. Molecular surfaces (green mesh) clearly illustrate the role of residues F44, H174, T183 and R189 in conferring selectivity towards water molecules in BisB5 ( B ) and CGA009 ( C ).

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques:

Selected uniquely shared Pfam annotations in Rhodopseudomonas palustris strains. <xref ref-type= * " width="100%" height="100%">

Journal: Bioinformatics and Biology Insights

Article Title: Functional Annotation Analytics of Rhodopseudomonas palustris Genomes

doi: 10.4137/BBI.S7316

Figure Lengend Snippet: Selected uniquely shared Pfam annotations in Rhodopseudomonas palustris strains. *

Article Snippet: The complete genome sequences of six Rhodopseudomonas palustris strains (HaA2, NCBI Taxon ID 316058; BisA53, Taxon ID 316055; BisB18, NCBI Taxon ID 316056; BisB5, NCBI Taxon ID 316057; CGA009, NCBI Taxon ID 258594, TIE-1, NCBI Taxon ID 395960) are available in the public genome databases., The statistics of selected genome features were obtained for each of the R. palustris genomes and were retrieved from the Organism Details page on the Integrated Microbial Genomes website (version 3.3, February 2011).

Techniques: