gene reference into function (generif) Search Results


gene references into function (generif)  (Biotechnology Information)
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Biotechnology Information gene references into function (generif)
Geneshot user interface for the PubMed querying tab. ( A ) Search engine input section. ( B ) Scatter plot of all publications that mention both the gene and the search terms against the normalized values (left); gene with and without search terms mentions over time (right). ( C ) Tables providing ranked lists of relevant genes based on <t>GeneRIF</t> (left), and predictions based on AutoRIF co-occurrence (right).
Gene References Into Function (Generif), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Geneshot user interface for the PubMed querying tab. ( A ) Search engine input section. ( B ) Scatter plot of all publications that mention both the gene and the search terms against the normalized values (left); gene with and without search terms mentions over time (right). ( C ) Tables providing ranked lists of relevant genes based on GeneRIF (left), and predictions based on AutoRIF co-occurrence (right).

Journal: Nucleic Acids Research

Article Title: Geneshot: search engine for ranking genes from arbitrary text queries

doi: 10.1093/nar/gkz393

Figure Lengend Snippet: Geneshot user interface for the PubMed querying tab. ( A ) Search engine input section. ( B ) Scatter plot of all publications that mention both the gene and the search terms against the normalized values (left); gene with and without search terms mentions over time (right). ( C ) Tables providing ranked lists of relevant genes based on GeneRIF (left), and predictions based on AutoRIF co-occurrence (right).

Article Snippet: With some similarity to these previously published tools, Geneshot converts PubMed identifiers (PMIDs) returned for arbitrary search terms to ranked lists of genes using gene-publication associations such as those encoded within Gene References into Function (GeneRIF) , a manually curated resource maintained by the National Center for Biotechnology Information (NCBI).

Techniques:

Median area under the receiver operating characteristic curve (AUC) distributions for predicting genes associated with terms from 16 Enrichr gene set libraries. The libraries are labeled as data-driven and manually curated. Predictions were made using four gene–gene similarity matrices created from Tagger, GeneRIF, AutoRIF and ARCHS4.

Journal: Nucleic Acids Research

Article Title: Geneshot: search engine for ranking genes from arbitrary text queries

doi: 10.1093/nar/gkz393

Figure Lengend Snippet: Median area under the receiver operating characteristic curve (AUC) distributions for predicting genes associated with terms from 16 Enrichr gene set libraries. The libraries are labeled as data-driven and manually curated. Predictions were made using four gene–gene similarity matrices created from Tagger, GeneRIF, AutoRIF and ARCHS4.

Article Snippet: With some similarity to these previously published tools, Geneshot converts PubMed identifiers (PMIDs) returned for arbitrary search terms to ranked lists of genes using gene-publication associations such as those encoded within Gene References into Function (GeneRIF) , a manually curated resource maintained by the National Center for Biotechnology Information (NCBI).

Techniques: Labeling