g obscurus dsm Search Results


g obscurus subsp dictyosporus dsm 43161t  (ATCC)
90
ATCC g obscurus subsp dictyosporus dsm 43161t
G Obscurus Subsp Dictyosporus Dsm 43161t, supplied by ATCC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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geodermatophilus obscurus  (ATCC)
92
ATCC geodermatophilus obscurus
Conserved motif in bacterial rhodopsin sequences annotated by MetaCLADE in the MT dataset EPAC. a Conservation profile of the MetaCLADE CCM fragment generated by the <t>Geodermatophilus</t> <t>obscurus</t> (strain ATCC 25078/DSM 43160/JCM 3152/G-20; Actinobacteria) sequence of the rhodopsin-like domain used by MetaCLADE to annotate environmental sequences in EPAC . An orange dot is located above all positions in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b . b Profile generated from the alignment of 371 environmental sequences annotated by MetaCLADE with CCMs of the rhodopsin-like domain and missed by HHMer. The letter height in the logo is proportional to the number of sequences in the alignment that contain the letter at a specific position, and the letter thickness is proportional to the number of gaps in the alignment at that position. c Rhodopsin fragment sequence from the dinoflagellate Prorocentrum donghaiense found in the NR database and matching, with E value 3e −22 and sequence identity 78%, the longest environmental sequence among the 371 annotated by MetaCLADE. Note that the fragment has been aligned to the profile in b for a visual inspection of conserved positions. d Conservation profile HMM of the Pfam bacterial rhodopsin domain PF01036 (fragment). As in c , positions are aligned with the profile in b for best visualisation. An orange dot is located above a position in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b
Geodermatophilus Obscurus, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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g obscurus subsp utahensis dsm 43162t  (ATCC)
93
ATCC g obscurus subsp utahensis dsm 43162t
Conserved motif in bacterial rhodopsin sequences annotated by MetaCLADE in the MT dataset EPAC. a Conservation profile of the MetaCLADE CCM fragment generated by the <t>Geodermatophilus</t> <t>obscurus</t> (strain ATCC 25078/DSM 43160/JCM 3152/G-20; Actinobacteria) sequence of the rhodopsin-like domain used by MetaCLADE to annotate environmental sequences in EPAC . An orange dot is located above all positions in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b . b Profile generated from the alignment of 371 environmental sequences annotated by MetaCLADE with CCMs of the rhodopsin-like domain and missed by HHMer. The letter height in the logo is proportional to the number of sequences in the alignment that contain the letter at a specific position, and the letter thickness is proportional to the number of gaps in the alignment at that position. c Rhodopsin fragment sequence from the dinoflagellate Prorocentrum donghaiense found in the NR database and matching, with E value 3e −22 and sequence identity 78%, the longest environmental sequence among the 371 annotated by MetaCLADE. Note that the fragment has been aligned to the profile in b for a visual inspection of conserved positions. d Conservation profile HMM of the Pfam bacterial rhodopsin domain PF01036 (fragment). As in c , positions are aligned with the profile in b for best visualisation. An orange dot is located above a position in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b
G Obscurus Subsp Utahensis Dsm 43162t, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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geodermatophilus obscurus g 20t  (DSMZ)
86
DSMZ geodermatophilus obscurus g 20t
Conserved motif in bacterial rhodopsin sequences annotated by MetaCLADE in the MT dataset EPAC. a Conservation profile of the MetaCLADE CCM fragment generated by the <t>Geodermatophilus</t> <t>obscurus</t> (strain ATCC 25078/DSM 43160/JCM 3152/G-20; Actinobacteria) sequence of the rhodopsin-like domain used by MetaCLADE to annotate environmental sequences in EPAC . An orange dot is located above all positions in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b . b Profile generated from the alignment of 371 environmental sequences annotated by MetaCLADE with CCMs of the rhodopsin-like domain and missed by HHMer. The letter height in the logo is proportional to the number of sequences in the alignment that contain the letter at a specific position, and the letter thickness is proportional to the number of gaps in the alignment at that position. c Rhodopsin fragment sequence from the dinoflagellate Prorocentrum donghaiense found in the NR database and matching, with E value 3e −22 and sequence identity 78%, the longest environmental sequence among the 371 annotated by MetaCLADE. Note that the fragment has been aligned to the profile in b for a visual inspection of conserved positions. d Conservation profile HMM of the Pfam bacterial rhodopsin domain PF01036 (fragment). As in c , positions are aligned with the profile in b for best visualisation. An orange dot is located above a position in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b
Geodermatophilus Obscurus G 20t, supplied by DSMZ, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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gen iii biolog microplates tests  (Biolog Inc)
90
Biolog Inc gen iii biolog microplates tests
Conserved motif in bacterial rhodopsin sequences annotated by MetaCLADE in the MT dataset EPAC. a Conservation profile of the MetaCLADE CCM fragment generated by the <t>Geodermatophilus</t> <t>obscurus</t> (strain ATCC 25078/DSM 43160/JCM 3152/G-20; Actinobacteria) sequence of the rhodopsin-like domain used by MetaCLADE to annotate environmental sequences in EPAC . An orange dot is located above all positions in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b . b Profile generated from the alignment of 371 environmental sequences annotated by MetaCLADE with CCMs of the rhodopsin-like domain and missed by HHMer. The letter height in the logo is proportional to the number of sequences in the alignment that contain the letter at a specific position, and the letter thickness is proportional to the number of gaps in the alignment at that position. c Rhodopsin fragment sequence from the dinoflagellate Prorocentrum donghaiense found in the NR database and matching, with E value 3e −22 and sequence identity 78%, the longest environmental sequence among the 371 annotated by MetaCLADE. Note that the fragment has been aligned to the profile in b for a visual inspection of conserved positions. d Conservation profile HMM of the Pfam bacterial rhodopsin domain PF01036 (fragment). As in c , positions are aligned with the profile in b for best visualisation. An orange dot is located above a position in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b
Gen Iii Biolog Microplates Tests, supplied by Biolog Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dsmz medium 65  (DSMZ)
90
DSMZ dsmz medium 65
Conserved motif in bacterial rhodopsin sequences annotated by MetaCLADE in the MT dataset EPAC. a Conservation profile of the MetaCLADE CCM fragment generated by the <t>Geodermatophilus</t> <t>obscurus</t> (strain ATCC 25078/DSM 43160/JCM 3152/G-20; Actinobacteria) sequence of the rhodopsin-like domain used by MetaCLADE to annotate environmental sequences in EPAC . An orange dot is located above all positions in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b . b Profile generated from the alignment of 371 environmental sequences annotated by MetaCLADE with CCMs of the rhodopsin-like domain and missed by HHMer. The letter height in the logo is proportional to the number of sequences in the alignment that contain the letter at a specific position, and the letter thickness is proportional to the number of gaps in the alignment at that position. c Rhodopsin fragment sequence from the dinoflagellate Prorocentrum donghaiense found in the NR database and matching, with E value 3e −22 and sequence identity 78%, the longest environmental sequence among the 371 annotated by MetaCLADE. Note that the fragment has been aligned to the profile in b for a visual inspection of conserved positions. d Conservation profile HMM of the Pfam bacterial rhodopsin domain PF01036 (fragment). As in c , positions are aligned with the profile in b for best visualisation. An orange dot is located above a position in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b
Dsmz Medium 65, supplied by DSMZ, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Conserved motif in bacterial rhodopsin sequences annotated by MetaCLADE in the MT dataset EPAC. a Conservation profile of the MetaCLADE CCM fragment generated by the Geodermatophilus obscurus (strain ATCC 25078/DSM 43160/JCM 3152/G-20; Actinobacteria) sequence of the rhodopsin-like domain used by MetaCLADE to annotate environmental sequences in EPAC . An orange dot is located above all positions in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b . b Profile generated from the alignment of 371 environmental sequences annotated by MetaCLADE with CCMs of the rhodopsin-like domain and missed by HHMer. The letter height in the logo is proportional to the number of sequences in the alignment that contain the letter at a specific position, and the letter thickness is proportional to the number of gaps in the alignment at that position. c Rhodopsin fragment sequence from the dinoflagellate Prorocentrum donghaiense found in the NR database and matching, with E value 3e −22 and sequence identity 78%, the longest environmental sequence among the 371 annotated by MetaCLADE. Note that the fragment has been aligned to the profile in b for a visual inspection of conserved positions. d Conservation profile HMM of the Pfam bacterial rhodopsin domain PF01036 (fragment). As in c , positions are aligned with the profile in b for best visualisation. An orange dot is located above a position in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b

Journal: Microbiome

Article Title: A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling

doi: 10.1186/s40168-018-0532-2

Figure Lengend Snippet: Conserved motif in bacterial rhodopsin sequences annotated by MetaCLADE in the MT dataset EPAC. a Conservation profile of the MetaCLADE CCM fragment generated by the Geodermatophilus obscurus (strain ATCC 25078/DSM 43160/JCM 3152/G-20; Actinobacteria) sequence of the rhodopsin-like domain used by MetaCLADE to annotate environmental sequences in EPAC . An orange dot is located above all positions in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b . b Profile generated from the alignment of 371 environmental sequences annotated by MetaCLADE with CCMs of the rhodopsin-like domain and missed by HHMer. The letter height in the logo is proportional to the number of sequences in the alignment that contain the letter at a specific position, and the letter thickness is proportional to the number of gaps in the alignment at that position. c Rhodopsin fragment sequence from the dinoflagellate Prorocentrum donghaiense found in the NR database and matching, with E value 3e −22 and sequence identity 78%, the longest environmental sequence among the 371 annotated by MetaCLADE. Note that the fragment has been aligned to the profile in b for a visual inspection of conserved positions. d Conservation profile HMM of the Pfam bacterial rhodopsin domain PF01036 (fragment). As in c , positions are aligned with the profile in b for best visualisation. An orange dot is located above a position in the profile when one of the three top residues with the highest frequency appears as highest frequency residue in the corresponding position of the conservation profile in b

Article Snippet: Conservation profile of the MetaCLADE CCM fragment generated by the Geodermatophilus obscurus (strain ATCC 25078/DSM 43160/JCM 3152/G-20; Actinobacteria) sequence of the rhodopsin-like domain used by MetaCLADE to annotate environmental sequences in EPAC [ ].

Techniques: Generated, Sequencing, Residue