Journal: Horticulture Research

Article Title: OmicsSuite: a customized and pipelined suite for analysis and visualization of multi-omics big data

doi: 10.1093/hr/uhad195

Figure Lengend Snippet: Formats, descriptions, and sample applications for input or output data files

Article Snippet: , Sequence FASTA format , Sequence FASTA format uses (.fasta, .fna, .fa) as the file suffix. It’s a text format for representing either nucleotide (DNA/RNA) sequences or amino acid (protein) sequences. , RevCom, LongMSA, SeqsTranslate, etc..

Techniques: Sequencing, Mutagenesis, Expressing, Mass Spectrometry, Generated

Journal: bioRxiv

Article Title: Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

doi: 10.1101/2020.01.31.928796

Figure Lengend Snippet: Genome Detective Coronavirus Typing Tool assembles genomes from next generation sequencing (NGS) in FASTAQ format or assembled genomes in FASTA format. A user can submit up to 1Gb of NGS data or 2,000 assembled genomic sequences. For each assembled genomic sequence, the tool identifies the virus species, constructs a phylogenetic tree and identifies phylogenetic clusters, which includes the novel coronavirus identified in Wuhan China in 2019 (2019-nCoV). The tool identifies changes at nucleotides, coding regions and proteins using a novel dynamic aligner and display all of the mutations in detailed tables and reports.

Article Snippet: It accepts assembled genomes in FASTA format or raw NGS data in FASTQ format from Illumina, Ion Torrent, PACBIO or Oxford Nanopore Technologies (ONT) can be submitted to the Genome Detective Virus Tool ( ) to automatically assemble the consensus genome prior to executing the Coronavirus Typing Tool.

Techniques: Next-Generation Sequencing, Genomic Sequencing, Sequencing, Virus, Construct