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Image Search Results
Journal: bioRxiv
Article Title: Evaluation of established methods for DNA extraction and primer pairs targeting 16S rRNA gene for bacterial microbiome profiling of olive xylem sap
doi: 10.1101/2020.12.11.420356
Figure Lengend Snippet: Boxplots of Richness and Shannon alpha-diversity indices of olive xylem bacterial communities at OTU taxonomic level determined by different DNA extraction kits and after taxonomic assignments with the Greengenes_13-8 and Silva_132 databases. Boxes represent the interquartile range while the black dots inside the box defines the median and whiskers represent the lowest and highest values. P -value was calculated using Kruskal-Wallis test at P < 0.05.
Article Snippet: The lowest number of phyla and classes were identified when using the
Techniques: DNA Extraction
Journal: bioRxiv
Article Title: Evaluation of established methods for DNA extraction and primer pairs targeting 16S rRNA gene for bacterial microbiome profiling of olive xylem sap
doi: 10.1101/2020.12.11.420356
Figure Lengend Snippet: Hierarchical clustering dendrogram analysis using Ward method and Bray-Curtis distance (A) and principal coordinates analysis (PCoA) of weighted UniFrac and Bray-Curtis distances (B) of olive xylem bacterial communities obtained by using different DNA extraction kits and after taxonomic assignments with the Greengenes_13-8 and Silva_132 databases. Colored dots represent the four clusters obtained in the hierarchical clustering analysis. PERMANOVA (999 permutations; P < 0.05) was performed to test significant differences according to DNA extraction kits.
Article Snippet: The lowest number of phyla and classes were identified when using the
Techniques: DNA Extraction
Journal: bioRxiv
Article Title: Evaluation of established methods for DNA extraction and primer pairs targeting 16S rRNA gene for bacterial microbiome profiling of olive xylem sap
doi: 10.1101/2020.12.11.420356
Figure Lengend Snippet: Taxonomic bubble plot of olive xylem bacteria relative abundance at phylum, class and family level present in four groups of DNA extraction kits and after taxonomic assignments with the Greengenes_13-8 and Silva_132 databases. Circle sizes represent the relative abundance and colors indicate DNA extraction kits groups shown in . Only abundances greater than 1% are shown.
Article Snippet: The lowest number of phyla and classes were identified when using the
Techniques: DNA Extraction