dls optical maps Search Results


dls optical mapping  (BioNano Genomics)
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BioNano Genomics dls optical mapping
Collinear DLE-1 markers on the two maps are linked (gray lines). All but three chromosomes are captured by two <t>DLS</t> maps. Large inversions on chromosomes 6 and 7 are marked by regions of reversed alignments between the two maps. Regions in green are stretches of random nucleotides in the reference assembly. Regions in yellow exhibit breaks in collinearity between the two maps.
Dls Optical Mapping, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dls+optical+maps/bio_rxiv__327817-119-12-19?v=BioNano+Genomics
Average 90 stars, based on 1 article reviews
dls optical mapping - by Bioz Stars, 2026-07
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Collinear DLE-1 markers on the two maps are linked (gray lines). All but three chromosomes are captured by two DLS maps. Large inversions on chromosomes 6 and 7 are marked by regions of reversed alignments between the two maps. Regions in green are stretches of random nucleotides in the reference assembly. Regions in yellow exhibit breaks in collinearity between the two maps.

Journal: bioRxiv

Article Title: A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping

doi: 10.1101/327817

Figure Lengend Snippet: Collinear DLE-1 markers on the two maps are linked (gray lines). All but three chromosomes are captured by two DLS maps. Large inversions on chromosomes 6 and 7 are marked by regions of reversed alignments between the two maps. Regions in green are stretches of random nucleotides in the reference assembly. Regions in yellow exhibit breaks in collinearity between the two maps.

Article Snippet: This study demonstrates that the Oxford Nanopore sequencing technology, combined with the DLS optical mapping technology recently developed by BioNano Genomics, can generate chromosome-scale assemblies of large and repeat-rich plant genomes.

Techniques:

Left: DLS maps aligning to in-silico maps of Chromosome 6 from public v3.0.1 assembly; Center: Close-up view of DLS map 6 and mapped ONT contigs; Right: Close-up views of hybrid maps (center - green) generated by merging DLS maps (left - blue) and in-silico maps of ONT contigs (“Ctg”, right - blue). Distances are shown, in Mbps.

Journal: bioRxiv

Article Title: A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping

doi: 10.1101/327817

Figure Lengend Snippet: Left: DLS maps aligning to in-silico maps of Chromosome 6 from public v3.0.1 assembly; Center: Close-up view of DLS map 6 and mapped ONT contigs; Right: Close-up views of hybrid maps (center - green) generated by merging DLS maps (left - blue) and in-silico maps of ONT contigs (“Ctg”, right - blue). Distances are shown, in Mbps.

Article Snippet: This study demonstrates that the Oxford Nanopore sequencing technology, combined with the DLS optical mapping technology recently developed by BioNano Genomics, can generate chromosome-scale assemblies of large and repeat-rich plant genomes.

Techniques: In Silico, Generated