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Qiagen
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OriGene
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OriGene
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OriGene
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OriGene
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OriGene
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Danaher Inc
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Rockland Immunochemicals
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OriGene
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Image Search Results
Journal: bioRxiv
Article Title: NASTRA: Innovative Short Tandem Repeat Analysis through Cluster-Based Structure-Aware Algorithm in Nanopore Sequencing Data
doi: 10.1101/2023.11.04.565630
Figure Lengend Snippet: Overview of the study design. a Nanopore sequencing were conducted on collected 84 individual samples (88 DNA samples) with different amplification methods and flow cells. With ForenSeq data and PowerSeq data, we optimized the parameters of NASTRA, and conduted performance evalutation and real-time scenario tesing. b. The workflow of NASTRA: 1. Extracing aligned reads from bam file; 2. Flanking regions of each read are trimmed; 3. Reads clustering are performed to find candidate allele sequences; 4. Repeat structure of each allele is inferred by the recursive inference algorithm; 5. Genotype calling.
Article Snippet: In order to perform a real-time scenario tesing, we collected 8
Techniques: Nanopore Sequencing, Amplification
Journal: bioRxiv
Article Title: NASTRA: Innovative Short Tandem Repeat Analysis through Cluster-Based Structure-Aware Algorithm in Nanopore Sequencing Data
doi: 10.1101/2023.11.04.565630
Figure Lengend Snippet: Performance on real-time scenario tesing. a. overview of genotyping results obtained from 8 DNA standard samples across 27 autosomal STRs, with variations in sequencing durations, using a R9.4.1 flow cell. b. The percentages of genotyping results achieving exact match, incomplete match or imbalance/interpretation across all 8 samples, with different sequencing durations. c. The distribution of sequencing depth in relation to different sequencing durations.
Article Snippet: In order to perform a real-time scenario tesing, we collected 8
Techniques: Sequencing