command line Search Results


gene set enrichment analysis command line  (Broad Institute Inc)
90
Broad Institute Inc gene set enrichment analysis command line
(A) <t>GSEA</t> analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.5<Normalized enrichment score (NES) or NES>1.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.
Gene Set Enrichment Analysis Command Line, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/bio_rxiv__2025__07__21__665900-227-9-21?v=Broad+Institute+Inc
Average 90 stars, based on 1 article reviews
gene set enrichment analysis command line - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
templatized c++ command line parser version 1.2  (SourceForge net)
90
SourceForge net templatized c++ command line parser version 1.2
(A) <t>GSEA</t> analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.5<Normalized enrichment score (NES) or NES>1.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.
Templatized C++ Command Line Parser Version 1.2, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/pmc04393625-214-15-25?v=SourceForge+net
Average 90 stars, based on 1 article reviews
templatized c++ command line parser version 1.2 - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
command-line interface  (Panoptes Pharma GmbH)
90
Panoptes Pharma GmbH command-line interface
Further resources relevant to developing a Zooniverse citizen science project
Command Line Interface, supplied by Panoptes Pharma GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/pmc10245346-32-0-0?v=Panoptes+Pharma+GmbH
Average 90 stars, based on 1 article reviews
command-line interface - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
analysis/synthesis super-vp command-line tool  (IRCAM GmbH)
90
IRCAM GmbH analysis/synthesis super-vp command-line tool
Further resources relevant to developing a Zooniverse citizen science project
Analysis/Synthesis Super Vp Command Line Tool, supplied by IRCAM GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/pm39467124-351-14-13?v=IRCAM+GmbH
Average 90 stars, based on 1 article reviews
analysis/synthesis super-vp command-line tool - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
albacore command line tool  (Oxford Nanopore)
90
Oxford Nanopore albacore command line tool
Further resources relevant to developing a Zooniverse citizen science project
Albacore Command Line Tool, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/pm31339905-110-11-8?v=Oxford+Nanopore
Average 90 stars, based on 1 article reviews
albacore command line tool - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
cxcalc command line script  (ChemAxon LLC)
90
ChemAxon LLC cxcalc command line script
Further resources relevant to developing a Zooniverse citizen science project
Cxcalc Command Line Script, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/pmc06466478-68-1-6?v=ChemAxon+LLC
Average 90 stars, based on 1 article reviews
cxcalc command line script - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
java command line tool  (SourceForge net)
90
SourceForge net java command line tool
Further resources relevant to developing a Zooniverse citizen science project
Java Command Line Tool, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/pmc03279424-163-5-21?v=SourceForge+net
Average 90 stars, based on 1 article reviews
java command line tool - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
command line flexx program  (BioSolveIT GmbH)
90
BioSolveIT GmbH command line flexx program
Further resources relevant to developing a Zooniverse citizen science project
Command Line Flexx Program, supplied by BioSolveIT GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/pm33927988-74-13-17?v=BioSolveIT+GmbH
Average 90 stars, based on 1 article reviews
command line flexx program - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
dnanexus command-line client  (DNAnexus Inc)
90
DNAnexus Inc dnanexus command-line client
Further resources relevant to developing a Zooniverse citizen science project
Dnanexus Command Line Client, supplied by DNAnexus Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/pmc06724669__supp_gr__250357__119_Supplemental_Methods-2-12-12?v=DNAnexus+Inc
Average 90 stars, based on 1 article reviews
dnanexus command-line client - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
vina command prompt  (AUTODOCK GmbH)
90
AUTODOCK GmbH vina command prompt
Further resources relevant to developing a Zooniverse citizen science project
Vina Command Prompt, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/10__1016_slash_j__rechem__2024__101464-145-9-9?v=AUTODOCK+GmbH
Average 90 stars, based on 1 article reviews
vina command prompt - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
auspex command-line interface  (Auspex Pharma)
90
Auspex Pharma auspex command-line interface
Further resources relevant to developing a Zooniverse citizen science project
Auspex Command Line Interface, supplied by Auspex Pharma, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/10__1107_slash_s2059798324008519-176-4-4?v=Auspex+Pharma
Average 90 stars, based on 1 article reviews
auspex command-line interface - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier
cxcalc command line tool chemaxon jchem version 16.6.13.0  (ChemAxon LLC)
90
ChemAxon LLC cxcalc command line tool chemaxon jchem version 16.6.13.0
Further resources relevant to developing a Zooniverse citizen science project
Cxcalc Command Line Tool Chemaxon Jchem Version 16.6.13.0, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/command+line/pm28961788-46-41-41?v=ChemAxon+LLC
Average 90 stars, based on 1 article reviews
cxcalc command line tool chemaxon jchem version 16.6.13.0 - by Bioz Stars, 2026-08
90/100 stars
  Buy from Supplier

Image Search Results


(A) GSEA analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.5<Normalized enrichment score (NES) or NES>1.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.

Journal: bioRxiv

Article Title: Differential sensitivity to LINE 1-induced damage contributes to the expansion of Tet2-deficient HSCs upon chronic inflammatory stress

doi: 10.1101/2025.07.21.665900

Figure Lengend Snippet: (A) GSEA analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.51.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.

Article Snippet: For pathway enrichment analysis and data visualization, we performed Gene Set Enrichment Analysis (GSEA) using the GSEA command line (v 4.3.3, Broad Institute) ( ).

Techniques: Expressing

Further resources relevant to developing a Zooniverse citizen science project

Journal: Histochemistry and Cell Biology

Article Title: Online citizen science with the Zooniverse for analysis of biological volumetric data

doi: 10.1007/s00418-023-02204-6

Figure Lengend Snippet: Further resources relevant to developing a Zooniverse citizen science project

Article Snippet: Panoptes command-line interface , github.com/zooniverse/panoptes-cli/blob/master/README.md.

Techniques: Virus