command line Search Results


picard command-line tools  (SourceForge net)
90
SourceForge net picard command-line tools
Picard Command Line Tools, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/picard command-line tools/product/SourceForge net
Average 90 stars, based on 1 article reviews
picard command-line tools - by Bioz Stars, 2026-06
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command line interface/rstudio  (RStudio)
90
RStudio command line interface/rstudio
Command Line Interface/Rstudio, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/command line interface/rstudio/product/RStudio
Average 90 stars, based on 1 article reviews
command line interface/rstudio - by Bioz Stars, 2026-06
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analysis/synthesis super-vp command-line tool  (IRCAM GmbH)
90
IRCAM GmbH analysis/synthesis super-vp command-line tool
Analysis/Synthesis Super Vp Command Line Tool, supplied by IRCAM GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/analysis/synthesis super-vp command-line tool/product/IRCAM GmbH
Average 90 stars, based on 1 article reviews
analysis/synthesis super-vp command-line tool - by Bioz Stars, 2026-06
90/100 stars
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albacore command line tool  (Oxford Nanopore)
90
Oxford Nanopore albacore command line tool
Albacore Command Line Tool, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/albacore command line tool/product/Oxford Nanopore
Average 90 stars, based on 1 article reviews
albacore command line tool - by Bioz Stars, 2026-06
90/100 stars
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templatized c++ command line parser version 1.2  (SourceForge net)
90
SourceForge net templatized c++ command line parser version 1.2
Templatized C++ Command Line Parser Version 1.2, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/templatized c++ command line parser version 1.2/product/SourceForge net
Average 90 stars, based on 1 article reviews
templatized c++ command line parser version 1.2 - by Bioz Stars, 2026-06
90/100 stars
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gene set enrichment analysis command line  (Broad Institute Inc)
90
Broad Institute Inc gene set enrichment analysis command line
(A) <t>GSEA</t> analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.5<Normalized enrichment score (NES) or NES>1.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.
Gene Set Enrichment Analysis Command Line, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/gene set enrichment analysis command line/product/Broad Institute Inc
Average 90 stars, based on 1 article reviews
gene set enrichment analysis command line - by Bioz Stars, 2026-06
90/100 stars
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command-line interface  (Panoptes Pharma GmbH)
90
Panoptes Pharma GmbH command-line interface
Further resources relevant to developing a Zooniverse citizen science project
Command Line Interface, supplied by Panoptes Pharma GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/command-line interface/product/Panoptes Pharma GmbH
Average 90 stars, based on 1 article reviews
command-line interface - by Bioz Stars, 2026-06
90/100 stars
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dnanexus command-line client  (DNAnexus Inc)
90
DNAnexus Inc dnanexus command-line client
Further resources relevant to developing a Zooniverse citizen science project
Dnanexus Command Line Client, supplied by DNAnexus Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/dnanexus command-line client/product/DNAnexus Inc
Average 90 stars, based on 1 article reviews
dnanexus command-line client - by Bioz Stars, 2026-06
90/100 stars
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graphical or a command-line interface  (SourceForge net)
90
SourceForge net graphical or a command-line interface
Further resources relevant to developing a Zooniverse citizen science project
Graphical Or A Command Line Interface, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/graphical or a command-line interface/product/SourceForge net
Average 90 stars, based on 1 article reviews
graphical or a command-line interface - by Bioz Stars, 2026-06
90/100 stars
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solve command-line version  (BioNano Genomics)
90
BioNano Genomics solve command-line version
Further resources relevant to developing a Zooniverse citizen science project
Solve Command Line Version, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/solve command-line version/product/BioNano Genomics
Average 90 stars, based on 1 article reviews
solve command-line version - by Bioz Stars, 2026-06
90/100 stars
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command-line interface  (ANSYS inc)
90
ANSYS inc command-line interface
Further resources relevant to developing a Zooniverse citizen science project
Command Line Interface, supplied by ANSYS inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/command-line interface/product/ANSYS inc
Average 90 stars, based on 1 article reviews
command-line interface - by Bioz Stars, 2026-06
90/100 stars
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calibracurve command line tool  (KNIME GmbH)
90
KNIME GmbH calibracurve command line tool
Further resources relevant to developing a Zooniverse citizen science project
Calibracurve Command Line Tool, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/calibracurve command line tool/product/KNIME GmbH
Average 90 stars, based on 1 article reviews
calibracurve command line tool - by Bioz Stars, 2026-06
90/100 stars
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Image Search Results


(A) GSEA analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.5<Normalized enrichment score (NES) or NES>1.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.

Journal: bioRxiv

Article Title: Differential sensitivity to LINE 1-induced damage contributes to the expansion of Tet2-deficient HSCs upon chronic inflammatory stress

doi: 10.1101/2025.07.21.665900

Figure Lengend Snippet: (A) GSEA analysis showing Hallmark gene sets significantly differentially enriched (padj<0.05 and -1.51.5) in WT-LPS vs WT (left) and/or in Tet2 -/- -LPS vs Tet2 -/- (right) comparisons. (B-E) Enrichment plots for E2F TARGETS (B-C) and TNF-α signalling via NF-κB (D-E) hallmark genesets in WT-LPS vs WT (B,D) and Tet2 -/- -LPS vs Tet2 -/- (C,E) conditions. NES: normalized enrichment score. (F-G) violin plot representing TE subfamilies expression for each TE subfamily significantly (p<0.05) differentially expressed in WT-LPS vs WT (F) and Tet2 -/- -LPS vs Tet2 -/- (G) conditions.

Article Snippet: For pathway enrichment analysis and data visualization, we performed Gene Set Enrichment Analysis (GSEA) using the GSEA command line (v 4.3.3, Broad Institute) ( ).

Techniques: Expressing

Further resources relevant to developing a Zooniverse citizen science project

Journal: Histochemistry and Cell Biology

Article Title: Online citizen science with the Zooniverse for analysis of biological volumetric data

doi: 10.1007/s00418-023-02204-6

Figure Lengend Snippet: Further resources relevant to developing a Zooniverse citizen science project

Article Snippet: Panoptes command-line interface , github.com/zooniverse/panoptes-cli/blob/master/README.md.

Techniques: Virus