Journal: Bioactive materials

Article Title: Tumor-derived apoptotic extracellular vesicle-mediated intercellular communication promotes metastasis and stemness of lung adenocarcinoma.

doi: 10.1016/j.bioactmat.2024.02.026

Figure Lengend Snippet: Fig. 1. Characteristics of apoptotic extracellular vesicles (apoEVs) derived from LUAD cells and normal lung epithelial cells. (A) Schematic diagram of apoEVs isolation. A549 and BEAS2b are induced by STS or Cisplatin (DDP) for 24 h and then apoptotic cell suspensions are isolated using a differential centrifugation to obtain apoEVs. (B) Representative flow cytometry analysis of BEAS2b apoptosis after STS treatment, and A549 apoptosis after Cisplatin (DDP) and STS treatment. (C) Representative TEM micrographs of apoEVs collected from the conditioned medium after apoptosis induction treatment of A549 and BEAS2b cells evaluated are shown. Scale bar, 200 nm. (D) Size distribution of BEAS2b- and A549-apoEVs were measured by nanoparticle tracking analyzer (NTA). (E) Representative histograms show the profile of the CD9, CD63 and CD81 levels in comparison to isotype control-stained for the BEAS2b and A549-derived apoEVs. (F) Nanoflow cytometry show apoEVs express apoptotic vesicles-specific surface markers Ptdser (shown by Annexin V staining). (G) Western blot of the indicated proteins in apoEVs, Tubulin (loading control) were used, western blotting was repeated at least three times and representative data are shown.

Article Snippet: ApoEVs derived from LUAD cell lines and Human Normal Lung Epithelial Cells BEAS2b were incubated with PE-conjugated anti-CD9, CD63 and CD81 (Elabscience), the general EV markers, at 4 ◦C for 30 min. To detect phosphatidylserine (Ptdser), FITC-Annexin V was used to stain apoEVs suspended in Annexin V Binding Buffer (Elabscience) for 15 min at 4 ◦C.

Techniques: Derivative Assay, Isolation, Centrifugation, Flow Cytometry, Comparison, Control, Staining, Cytometry, Western Blot

Journal: Retrovirology

Article Title: A role for CD81 on the late steps of HIV-1 replication in a chronically infected T cell line

doi: 10.1186/1742-4690-6-28

Figure Lengend Snippet: Localization of HIV-1 Gag and Env with tetraspanins at the cell surface of HIV-1 infected MOLT cells . MOLT/HIV-1 cells were fixed and the cell surface was stained directly with the anti-tetraspanin CD9, CD63, CD81 or CD82 antibodies, or with antibodies against CD45 or Lamp2. To reveal the viral proteins Gag and Env, the cells were co-stained with anti-MAp17 (Gag in green) and anti-SU gp120 (Env in red) antibodies. It can be observed that the tetraspanins are localized in microdomains close to or at the cell periphery. The percentage of Gag co-localization with the markers was calculated by image analysis and reported in the graph (Fig. 3).

Article Snippet: For Fig. SixB, directly PE-conjugated antibodies against CD81 (JS-81) or CD45 (HI30) from BD-Pharmagen were used at a saturating concentration.

Techniques: Infection, Staining

Journal: Retrovirology

Article Title: A role for CD81 on the late steps of HIV-1 replication in a chronically infected T cell line

doi: 10.1186/1742-4690-6-28

Figure Lengend Snippet: Localization of HIV-1 Gag and Env with tetraspanins in permeabilized HIV-1 infected MOLT cells . MOLT/HIV-1 cells were fixed, permeabilized, and stained with the anti-tetraspanin CD9, CD63, CD81 or CD82 antibodies, or with antibodies against CD45 or Lamp2. To reveal the viral proteins Gag and Env, the cells were co-stained with anti-MAp17 (Gag in green) and anti-SU gp120 (Env in red) antibodies. The percentage of Gag co-localization with the markers was calculated by image analysis and reported in the graph (Fig. 3).

Article Snippet: For Fig. SixB, directly PE-conjugated antibodies against CD81 (JS-81) or CD45 (HI30) from BD-Pharmagen were used at a saturating concentration.

Techniques: Infection, Staining

Journal: Retrovirology

Article Title: A role for CD81 on the late steps of HIV-1 replication in a chronically infected T cell line

doi: 10.1186/1742-4690-6-28

Figure Lengend Snippet: The tetraspanins CD63, CD81 and CD82 are associated with purified HIV-1 virions . (A). Cell lysate from MOLT/HIV-1 cells was run on SDS-PAGE and probed with antibodies against CD45, CD9, CD63, CD81, CD82, and Lamp2 as indicated ("cells"). Purified viral pellet from MOLT/HIV-1 was immunoblotted with the same antibodies ("virus"). (B). Purified virions produced by MOLT/HIV-1 cells (left panel) were loaded on 20–70% sucrose density gradient. After ultracentrifugation at equilibrium, the gradient was fractionated and the density (g/ml) of each fraction was determined, as indicated. Immunoblots of all fractions were performed using antibodies against Gag and Env, the tetraspanins CD63, CD81, CD82, or CD9, and CD45 or Lamp2 as controls. HIV-1 virions, as seen by the CAp24 and TMgp41, appeared in fractions with a density between 1.15–1.17 g/ml. In the same viral fractions, signals were obtained for the tetraspanins CD63, CD81 and CD82. Control gradient from uninfected MOLT cells is presented on the right panel. (C). Purified HIV-1 virions from MOLT/HIV-1 were submitted to immunoprecipitation with CD45, CD9, CD63, CD81 and CD82 antibodies (lane 4 to 7), or with HIV-1 serum and Env gp120 antibody as positive controls (lane 1 and 2) or without antibody as a negative control (No Ab – lane 3). Immunoprecipitated virions were run on SDS-PAGE gels and revealed with an anti-CAp24 antibody.

Article Snippet: For Fig. SixB, directly PE-conjugated antibodies against CD81 (JS-81) or CD45 (HI30) from BD-Pharmagen were used at a saturating concentration.

Techniques: Purification, SDS Page, Virus, Produced, Western Blot, Control, Immunoprecipitation, Negative Control

Journal: Retrovirology

Article Title: A role for CD81 on the late steps of HIV-1 replication in a chronically infected T cell line

doi: 10.1186/1742-4690-6-28

Figure Lengend Snippet: HIV-1 Gag proteins form intracellular complexes with endogenous CD81 and CD82 tetraspanins . Cell lysates from MOLT/HIV-1 cells were immunoprecipitated with antibodies directed against CD81, CD63 and CD82 or a control antibody. Non-immunoprecipitated (supernatants) or immunoprecipitated (IP) proteins were resolved by SDS-PAGE and blotted with an anti-HIV-1 human serum or an anti-CD82 antibody as indicated. The positions of Gag products and CD82 are indicated. The anti-CD82 blot shows the integrity of the tetraspanin web. The anti-HIV-1 blot shows intracellular Gag-tetraspanin interactions.

Article Snippet: For Fig. SixB, directly PE-conjugated antibodies against CD81 (JS-81) or CD45 (HI30) from BD-Pharmagen were used at a saturating concentration.

Techniques: Immunoprecipitation, Control, SDS Page

Journal: Retrovirology

Article Title: A role for CD81 on the late steps of HIV-1 replication in a chronically infected T cell line

doi: 10.1186/1742-4690-6-28

Figure Lengend Snippet: Partial inhibition of HIV-1 release using anti-tetraspanin antibodies . (A) MOLT/HIV-1 cells were incubated for one hour with anti-tetraspanin antibodies, or with anti-VSVg, anti-CD45 or anti-Lamp2; the antibodies were then removed, and virus release was measured in the supernatant 3 hours post incubation with the antibodies. The results of two independent experiments are presented on the chart. The percentage of virus release is evaluated by RT assay in comparison to the release in the absence of antibodies, normalized to 100%. (B) Cell surface tetraspanin inaccessibility after treatment of MOLT/HIV-1 cells with the anti-tetraspanin antibodies was evaluated by FACS analysis. The histograms present the surface staining of untreated cells and cells treated with anti-CD81 (first panel) and anti-CD45 (last panel), as indicated, at 3 hours post-viral release. When the proteins are expressed at the cell surface (i.e. CD81 or CD45), the antibody treatment leads to a decrease of the Mean Fluorescent Intensity measured. (C) Infectivity of the released virus after the treatment with anti-tetraspanin antibodies. The same amount of virus was inoculated on SupT1 cells, and the resulting RT activity from de novo produced virions was detected (See Materials and Methods). The infectivity obtained from the "No Ab" control virus was referred as 100%. (D) Virus maturation (and/or retention) as well as virus release at 3 hours after anti-tetraspanin treatment in MOLT/HIV-1 cells were evaluated by immunoblotting using an anti-CAp24 monoclonal antibody. Cells were lysed and 50 μg of proteins were deposited on a gel. On the upper panel ("cell lysate") two expositions of the film are presented: at 15 seconds, only the viral capsid could be detected; at 1 hour, all maturation products appeared. Partial inhibition of virus release could be observed on the lower panel ("virus release") which is consistent with that observed by the RT assay on Fig. 4A.

Article Snippet: For Fig. SixB, directly PE-conjugated antibodies against CD81 (JS-81) or CD45 (HI30) from BD-Pharmagen were used at a saturating concentration.

Techniques: Inhibition, Incubation, Virus, Comparison, Staining, Infection, Activity Assay, Produced, Control, Western Blot

Journal: Retrovirology

Article Title: A role for CD81 on the late steps of HIV-1 replication in a chronically infected T cell line

doi: 10.1186/1742-4690-6-28

Figure Lengend Snippet: Effects of CD81 downregulation by shRNA on viral production, HIV infectivity and Gag localization . (A) Virus release was determined by measuring RT activity in the supernatant of both control and CD81 silenced MOLT/HIV-1 cells. It is expressed as a percentage of the control. Transduction of MOLT/HIV-1 cells with a CD81 shRNA led to an inhibition of HIV-1 production up to 70% (3-fold). (B) Immunoblots showing intracellular CD81 silencing and its effect on viral particle release. MOLT/HIV-1 cells were transduced by HIV-1 based lentivectors containing a shRNA against CD81 or a control shRNA. Three days later, the cells were washed, and resuspended in new medium for 6 hours to allow HIV-1 virion accumulation. The resulting viral particles were run on a SDS-PAGE gel and immunoblotted with an anti-CAp24 antibody to reveal virus particle release. The cells treated with the control shRNA (lane, "sh control") or with the anti-CD81 shRNA (lane "sh CD81") were lysed and total cell protein content were deposited on SDS-PAGE. Resulting immunoblots were probed with different antibodies as indicated. (C) Infectivity of virions issued from shRNA control or CD81 silenced MOLT/HIV-1. The same amount of virus was innoculated on SupT1 cells, and the resulting RT activity from de novo produced virions was detected (See Materials and Methods). The infectivity obtained from the shRNA control virus was referred as 100%. (D) Gag localization at the cell surface by immunofluorescence microscopy. After treatment with lentiviral vectors expressing shCD81 or control shRNA, MOLT/HIV-1 cells were fixed, permeabilized and stained for Gag (using anti-MAp17 antibody) as described in Materials and Methods. Two major phenotypes of Gag were observed: "clustered" – Gag is located in a cluster at one side of the cell surface; or "dispersed" – Gag is distributed all over the cell periphery as punctuated small dots. Patterns were quantified for CD81(-) cells and for the control cells; the numbers were reported on the chart.

Article Snippet: For Fig. SixB, directly PE-conjugated antibodies against CD81 (JS-81) or CD45 (HI30) from BD-Pharmagen were used at a saturating concentration.

Techniques: shRNA, Infection, Virus, Activity Assay, Control, Transduction, Inhibition, Western Blot, SDS Page, Produced, Immunofluorescence, Microscopy, Expressing, Staining

Journal: bioRxiv

Article Title: Salivary exosomal miR-1307-5p predicts disease aggressiveness and poor prognosis in oral squamous cell carcinoma patients

doi: 10.1101/2022.07.13.499918

Figure Lengend Snippet: (a) Representative TEM images of exosomes from OSCC patients, (Scale: 200nm); (b) Estimation of size and concentration of salivary exosomes from OSCC patients using Nanoparticle Tracking Analysis (NTA). The x-axis indicates the size distribution of particles and the y-axis shows the signal intensity in NTA; (c-e) Characterization of exosomes by flow cytometry. We used a membrane-binding dye vFRed to stain exosomes and examined the violet side scatter v/s vFRed staining of these exosomes. This profile was similar to the profile of Lipo-50 liposomes used as a reference standard. Salivary exosomes were stained with antibodies against tetraspanins (CD63, CD81 and CD9) labelled with PE, and APC labelled CD47 antibody. We identified a distinct CD47+/vFRed+ population in the exosome population that was absent in the unstained control. This population was then examined for tetraspanin expression and showed detectable levels of tetraspanins. Since these particles stain with vFRed, have a violet side scatter similar to 50 nm liposomes, express CD47 and tetraspanins, we concluded that these are exosomes.

Article Snippet: The samples (at optimal dilution) were then incubated with PE tagged antibodies against tetraspanins (TS; CD9, CD63, and CD81) (Cellarcus Biosciences, CA, USA) and APC tagged CD47 antibody (Thermo Scientific, Waltham, MA, USA) for one hour at room temperature.

Techniques: Concentration Assay, Flow Cytometry, Membrane, Binding Assay, Staining, Liposomes, Control, Expressing