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Image Search Results
Journal: Science Advances
Article Title: TRiC-assisted folding of class I HDAC family proteins regulated by distinct co-chaperone and cofactor networks
doi: 10.1126/sciadv.aef3048
Figure Lengend Snippet: ( A ) Sequence identities among HDAC1, HDAC2, HDAC3, and HDAC8. AlphaFold2- predicted HDAC3 model was aligned with HDAC1 and HDAC8, respectively. ( B ) Co-immunoprecipitation (co-IP) assays show that TRiC (monitored by CCT8) interacts with Flag-tagged HDAC1 and HDAC3, but displays no detectable binding to HDAC8. mNG2 serves as a negative control. ( C ) Top and side views of the closed-state TRiC-HDAC1-S1 cryo-EM map, exhibiting extra densities (medium violet red) within TRiC chamber. ( D ) The extra chamber density matches the HDAC1 model, with the N terminus less well ordered. ( E ) Comparison of substrate positions in TRiC-HDAC1-S1 and TRiC-HDAC3-S2, with their structures superimposed (HDAC3 density transparent seagrass green, HDAC1 violet red). ( F ) XL-MS analysis of the TRiC-HDAC1 complex, showing cross-links between HDAC1 and TRiC, between HDAC1 and PFD, and between PFD and TRiC. ( G ) HDAC8 refolding assay. HDAC8 was denatured in 6 M guanidine hydrochloride and dialyzed to remove the denaturant, with activity recovery monitored during dialysis. The schematic at left outlines the unfolding/refolding protocol; the bar graph at right quantifies HDAC8 activity relative to native protein (100%) at refold1–3 stages. “Unfolded” denotes activity in denaturant-containing buffer. Data are mean ± SEM ( n = 3). Statistical significance was assessed by one-way ANOVA: * P < 0.05, ** P < 0.01, *** P < 0.001, **** P < 0.0001; ns, not significant. Analyzed with GraphPad Prism. ( H ) Electrostatic surface property analysis shows that, when aligned with HDAC1 and HDAC3 in the closed TRiC chamber, the putative TRiC-interaction surface of HDAC8 is predominantly positively charged, opposite to those of HDAC1 and HDAC3, disfavoring TRiC binding.
Article Snippet: Antibody dilution was 1:2000 for the following immunoblots: HDAC3 (ABclonal A28114), HDAC1 (ABclonal A26492), HSPA1B (ABclonal A23457), PDCD5 (Proteintech 12456–1-AP), CCT2 (ABclonal A6546),
Techniques: Sequencing, Immunoprecipitation, Co-Immunoprecipitation Assay, Binding Assay, Negative Control, Cryo-EM Sample Prep, Comparison, Structural Proteomics, Activity Assay