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Overview of Open Source Brain (A) Functionality of Open Source <t>Brain</t> <t>(OSB)</t> and interactions with users and external resources. (Left) Model sources for OSB are shown. Center: OSB resources to facilitate conversion of models in open source repositories to standardized formats; to validate against the standards; to test model code; and to visualize, analyze, and simulate models through a web browser are shown. A search function is provided, together with an application programming interface <t>(API).</t> Right: user interaction with projects can be through the OSB web interface or by command line. Wikis enable feedback, and issues can be opened. Project code can be cloned, forked, or committed using standard open source workflows or downloaded as zipped releases. Simulations can be performed on the OSB server or submitted to the Neuroscience Gateway for execution on their supercomputing facilities. See also <xref ref-type=Figure S1 . (B) Functionality following the conversion of published models from simulator-specific formats into standardized representations. This includes automated validation, visualization, analysis, and simulations on different platforms, using a variety of generic tools. " width="250" height="auto" />
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Overview of Open Source Brain (A) Functionality of Open Source <t>Brain</t> <t>(OSB)</t> and interactions with users and external resources. (Left) Model sources for OSB are shown. Center: OSB resources to facilitate conversion of models in open source repositories to standardized formats; to validate against the standards; to test model code; and to visualize, analyze, and simulate models through a web browser are shown. A search function is provided, together with an application programming interface <t>(API).</t> Right: user interaction with projects can be through the OSB web interface or by command line. Wikis enable feedback, and issues can be opened. Project code can be cloned, forked, or committed using standard open source workflows or downloaded as zipped releases. Simulations can be performed on the OSB server or submitted to the Neuroscience Gateway for execution on their supercomputing facilities. See also <xref ref-type=Figure S1 . (B) Functionality following the conversion of published models from simulator-specific formats into standardized representations. This includes automated validation, visualization, analysis, and simulations on different platforms, using a variety of generic tools. " width="250" height="auto" />
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Overview of Open Source Brain (A) Functionality of Open Source <t>Brain</t> <t>(OSB)</t> and interactions with users and external resources. (Left) Model sources for OSB are shown. Center: OSB resources to facilitate conversion of models in open source repositories to standardized formats; to validate against the standards; to test model code; and to visualize, analyze, and simulate models through a web browser are shown. A search function is provided, together with an application programming interface <t>(API).</t> Right: user interaction with projects can be through the OSB web interface or by command line. Wikis enable feedback, and issues can be opened. Project code can be cloned, forked, or committed using standard open source workflows or downloaded as zipped releases. Simulations can be performed on the OSB server or submitted to the Neuroscience Gateway for execution on their supercomputing facilities. See also <xref ref-type=Figure S1 . (B) Functionality following the conversion of published models from simulator-specific formats into standardized representations. This includes automated validation, visualization, analysis, and simulations on different platforms, using a variety of generic tools. " width="250" height="auto" />
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Image Search Results


Overview of Open Source Brain (A) Functionality of Open Source Brain (OSB) and interactions with users and external resources. (Left) Model sources for OSB are shown. Center: OSB resources to facilitate conversion of models in open source repositories to standardized formats; to validate against the standards; to test model code; and to visualize, analyze, and simulate models through a web browser are shown. A search function is provided, together with an application programming interface (API). Right: user interaction with projects can be through the OSB web interface or by command line. Wikis enable feedback, and issues can be opened. Project code can be cloned, forked, or committed using standard open source workflows or downloaded as zipped releases. Simulations can be performed on the OSB server or submitted to the Neuroscience Gateway for execution on their supercomputing facilities. See also <xref ref-type=Figure S1 . (B) Functionality following the conversion of published models from simulator-specific formats into standardized representations. This includes automated validation, visualization, analysis, and simulations on different platforms, using a variety of generic tools. " width="100%" height="100%">

Journal: Neuron

Article Title: Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits

doi: 10.1016/j.neuron.2019.05.019

Figure Lengend Snippet: Overview of Open Source Brain (A) Functionality of Open Source Brain (OSB) and interactions with users and external resources. (Left) Model sources for OSB are shown. Center: OSB resources to facilitate conversion of models in open source repositories to standardized formats; to validate against the standards; to test model code; and to visualize, analyze, and simulate models through a web browser are shown. A search function is provided, together with an application programming interface (API). Right: user interaction with projects can be through the OSB web interface or by command line. Wikis enable feedback, and issues can be opened. Project code can be cloned, forked, or committed using standard open source workflows or downloaded as zipped releases. Simulations can be performed on the OSB server or submitted to the Neuroscience Gateway for execution on their supercomputing facilities. See also Figure S1 . (B) Functionality following the conversion of published models from simulator-specific formats into standardized representations. This includes automated validation, visualization, analysis, and simulations on different platforms, using a variety of generic tools.

Article Snippet: This is enabled by generating an API key on the Dropbox site and adding this to the user’s OSB account.

Techniques: Clone Assay, Biomarker Discovery