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Image Search Results
Journal: Cancers
Article Title: Common and Differential Traits of the Membrane Lipidome of Colon Cancer Cell Lines and Their Secreted Vesicles: Impact on Studies Using Cell Lines
doi: 10.3390/cancers12051293
Figure Lengend Snippet: Protein and gene expression of ether lipid synthetic enzymes in primary and cancer colon cell lines. ( A – D ) Protein expression of ether lipid synthesis enzymes: FAR1 and FAR2 (fatty acyl-CoA reductases 1 and 2), AGPS (alkyl-glycerone-3-phosphate synthase), and GNPAT (glyceronephosphate O-acyltransferase) in primary (Pr) and cancer colon cell lines (Co, Colo-201; HT, HT29; LS, LS174T; SW, SW480). Values are expressed as a percentage of control and represent the mean ± SEM, n = 3–5; ( E – H ) Gene expression of ether lipid synthesis enzymes in primary (Pr) and cancer colon cell lines (Co, Colo-201; HT, HT29; LS, LS174T; SW, SW480). Values are expressed as a percentage of control and represent the mean ± SEM, n = 5. To assess statistical differences, one-way ANOVA and Bonferroni post-test were applied. For simplicity only significance with respect to primary cells are expressed. * p < 0.05; ** p < 0.01; *** p < 0.001. Detailed results of all comparisons are included in . Original values and densitometry values are included in and , respectively.
Article Snippet: Membranes were then incubated at 4 °C overnight with primary antibodies against GNPAT (1:600, Atlas Antibodies, Stockholm, Sweden, cat# HPA060059),
Techniques: Gene Expression, Expressing, Control
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression profile of circRNAs in the human thyroid cancer cell line FRO
doi: 10.3892/ol.2018.8356
Figure Lengend Snippet: Primer sequences.
Article Snippet: FRO cells were cultured in a 6-well plate for 24 h, and then transfected with an
Techniques: Sequencing
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression profile of circRNAs in the human thyroid cancer cell line FRO
doi: 10.3892/ol.2018.8356
Figure Lengend Snippet: Expression of AGPS in thyroid cancer cell lines. AGPS expression in the thyroid cancer cell lines TPC-1, FTC-133 and FRO was evaluated using reverse transcription-quantitative polymerase chain reaction analysis. *P<0.05 vs. TPC-1. AGPS, alkylglycerone phosphate synthase.
Article Snippet: FRO cells were cultured in a 6-well plate for 24 h, and then transfected with an
Techniques: Expressing, Reverse Transcription, Real-time Polymerase Chain Reaction
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression profile of circRNAs in the human thyroid cancer cell line FRO
doi: 10.3892/ol.2018.8356
Figure Lengend Snippet: Heatmap of circRNA expression data. The different expressions of circRNAs were depicted in the heatmap. Green represents a decreased expression of circRNAs and red represents an increased expression of circRNAs. Cluster analysis demonstrated that AGPS sh and AGPS KO could induce the alteration in circRNAs expression in FRO cells. circRNA, circular RNA; AGPS, alkylglycerone phosphate synthase; sh, short hairpin; KO, knockout.
Article Snippet: FRO cells were cultured in a 6-well plate for 24 h, and then transfected with an
Techniques: Expressing, Knock-Out
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression profile of circRNAs in the human thyroid cancer cell line FRO
doi: 10.3892/ol.2018.8356
Figure Lengend Snippet: Comparison of differentially expressed circRNAs. (A) Differentially expressed circRNAs among the different groups were identified by scatter plots. The orange points represent >2-fold upregulation, whereas the blue points represent >2-fold downregulation. (B) Differences in circRNA expression among the three groups. circRNA, circular RNA; AGPS, alkylglycerone phosphate synthase; sh, short hairpin; KO, knockout.
Article Snippet: FRO cells were cultured in a 6-well plate for 24 h, and then transfected with an
Techniques: Comparison, Expressing, Knock-Out
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression profile of circRNAs in the human thyroid cancer cell line FRO
doi: 10.3892/ol.2018.8356
Figure Lengend Snippet: Venn diagrams of differentially expressed circular RNAs in the three groups. The Venn diagrams represent the shared modified genes between groups: AGPS_sh vs. control; AGPS_KO vs. control; and AGPS_sh vs. AGPS_KO, in FRO cell lines. AGPS, alkylglycerone phosphate synthase; sh, short hairpin; KO, knockout.
Article Snippet: FRO cells were cultured in a 6-well plate for 24 h, and then transfected with an
Techniques: Modification, Control, Knock-Out
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression profile of circRNAs in the human thyroid cancer cell line FRO
doi: 10.3892/ol.2018.8356
Figure Lengend Snippet: Top 50 differentially expressed circRNAs in AGPS sh and AGPS KO human thyroid cancer FRO cells.
Article Snippet: FRO cells were cultured in a 6-well plate for 24 h, and then transfected with an
Techniques: Control
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression profile of circRNAs in the human thyroid cancer cell line FRO
doi: 10.3892/ol.2018.8356
Figure Lengend Snippet: Validation of differentially expressed circRNAs using RT-qPCR. The top 10 circRNAs with increased and decreased expression in the AGPS KO group compared with the control group by RT-qPCR were identified. *P<0.05 vs. control. circRNA, circular RNA; RT-qPCR, reverse transcription-quantitative polymerase chain reaction; AGPS, alkylglycerone phosphate synthase; sh, short hairpin; KO, knockout; hsa, Homo sapiens .
Article Snippet: FRO cells were cultured in a 6-well plate for 24 h, and then transfected with an
Techniques: Biomarker Discovery, Quantitative RT-PCR, Expressing, Control, Reverse Transcription, Real-time Polymerase Chain Reaction, Knock-Out
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression profile of circRNAs in the human thyroid cancer cell line FRO
doi: 10.3892/ol.2018.8356
Figure Lengend Snippet: GO analysis of AGPS silencing in thyroid cancer FRO cells. GO analysis was performed on the up- and downregulated genes identified in the AGPS sh, AGPS KO and control thyroid cancer FRO cells. The y-axis represented gene ontology entries, the x-axis represented -log10 (P-value). -log10 (P-value) >2 was considered to indicate a significant threshold. (A) Upregulation and (B) downregulation of MF, BP and CC by GO analysis of AGPS silencing in FRO cells compared with control thyroid cancer FRO cells. (C) Upregulation and (D) downregulation of MF, BP and CC by GO analysis of AGPS silencing in FRO cells compared with AGPS KO in thyroid cancer FRO cells. (E) Upregulation and (F) downregulation of MF, BP and CC by GO analysis of AGPS KO compared with control thyroid cancer FRO cells. GO, Gene Ontology; AGPS, alkylglycerone phosphate synthase; sh, short hairpin; KO, knockout; MF, molecular function; BP, biological process; CC, cellular component.
Article Snippet: FRO cells were cultured in a 6-well plate for 24 h, and then transfected with an
Techniques: Control, Knock-Out
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression profile of circRNAs in the human thyroid cancer cell line FRO
doi: 10.3892/ol.2018.8356
Figure Lengend Snippet: KEGG pathway enrichment analysis of AGPS silencing in thyroid cancer FRO cells. KEGG pathway enrichment analysis is represented by histograms and scatter diagrams. Orange represents the pathway of upregulation gene enrichment, whereas blue represents the downregulated pathway of gene enrichment. The left and right sides of the scatter diagrams correspond to the downregulated and upregulated gene enrichment pathways, respectively. The x-axes represent the proportion of enriched genes, whereas the y-axes contain the name of the KEGG pathway. If up- or downregulated genes were enriched in a certain pathway, this pathway was represented as a point in the graph, the color of which indicated a significant P-value, whereas its size represented the number of differentially expressed genes in that particular pathway. Effect of regulatory function and signaling pathway by KEGG pathway enrichment analysis of AGPS silencing compared with (A) control and (B) KO thyroid cancer FRO cells. (C) Effect of regulatory function and signaling pathway by KEGG pathway enrichment analysis of AGPS KO compared with control thyroid cancer FRO cells. KEGG, Kyoto Encyclopedia of Genes and Genomes; AGPS, alkylglycerone phosphate synthase; KO, knockout; hsa, Homo sapiens .
Article Snippet: FRO cells were cultured in a 6-well plate for 24 h, and then transfected with an
Techniques: Control, Knock-Out
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression levels of lncRNAs in glioma cells and its functional prediction
doi: 10.3892/ol.2020.11927
Figure Lengend Snippet: Effect of AGPS silencing on the expression levels of AGPS in glioma cells. Western blotting identified significantly downregulated expression levels of AGPS in AGPS-silenced U251 cells. n=3 *P<0.05 vs. control; # P<0.05 vs. shR-AGPS-1 group. shR, short hairpin RNA; AGPS, alkylglycerone phosphate synthase.
Article Snippet:
Techniques: Expressing, Western Blot, Control, shRNA
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression levels of lncRNAs in glioma cells and its functional prediction
doi: 10.3892/ol.2020.11927
Figure Lengend Snippet: Effect of AGPS silencing on the cellular morphology of U251 cells. (A) Morphological observation under the microscope in AGPS-silenced U251 cells. Magnification, ×100 or ×200. (B) BrdU assay results revealed a significant inhibition over the proliferation of AGPS-silenced U251 cells. n=10. *P<0.05 shR-2 vs. shR-1, # P<0.05 shR-1 vs. control. shR, short hairpin RNA; AGPS, alkylglycerone phosphate synthase; OD, optical density.
Article Snippet:
Techniques: Microscopy, BrdU Staining, Inhibition, Control, shRNA
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression levels of lncRNAs in glioma cells and its functional prediction
doi: 10.3892/ol.2020.11927
Figure Lengend Snippet: Distribution of differentially expressed lncRNAs and mRNAs identified in AGPS-silenced glioma cells. Heatmap and Venn diagrams of differentially expressed (A) lncRNAs and (B) mRNAs in AGPS-silenced U251 cells. The differential expression of lncRNAs and mRNAs were depicted in the heatmap. Green represents the downregulated expression of lncRNAs/mRNAs and red represents the upregulated expression of lncRNAs/mRNAs. The Venn diagrams represent the shared modified genes between groups. n=3. The scale bar indicates the FC, and (|FC|)>1.2 was used as a threshold. shR, short hairpin RNA; AGPS, alkylglycerone phosphate synthase; lncRNA, long non-coding RNA; FC, fold-change.
Article Snippet:
Techniques: Quantitative Proteomics, Expressing, Modification, shRNA
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression levels of lncRNAs in glioma cells and its functional prediction
doi: 10.3892/ol.2020.11927
Figure Lengend Snippet: Top 40 differentially expressed lncRNAs in AGPS-silenced human glioma U251 cells.
Article Snippet:
Techniques: Control
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression levels of lncRNAs in glioma cells and its functional prediction
doi: 10.3892/ol.2020.11927
Figure Lengend Snippet: Top 40 differentially expressed mRNAs in AGPS-silenced human glioma U251 cells.
Article Snippet:
Techniques: Control
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression levels of lncRNAs in glioma cells and its functional prediction
doi: 10.3892/ol.2020.11927
Figure Lengend Snippet: Functional prediction based on long non-coding RNA and mRNA co-expression in AGPS-silenced U251 cells. (A) Classification of KEGG biological functions analysis in AGPS-silenced glioma cells in Biological systems and Cellular functions. (B) Top 20 signaling pathways identified using KEGG signaling pathway enrichment analysis of AGPS-silenced U251 cells. (C) Top 20 biological process terms identified using GO enrichment analysis of AGPS-silenced U251 cells. AGPS, alkylglycerone phosphate synthase; KEGG, Kyoto Encyclopedia of Genes and Genomes; GO, Gene Ontology.
Article Snippet:
Techniques: Functional Assay, Expressing, Protein-Protein interactions
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression levels of lncRNAs in glioma cells and its functional prediction
doi: 10.3892/ol.2020.11927
Figure Lengend Snippet: Signaling transduction and pathway network of co-expressed lncRNAs and mRNAs in AGPS-silenced U251 cells. (A) Pathway network of co-expressed lncRNAs and mRNAs in AGPS-silenced U251 cells. (B) Global signal transduction network of co-expressed lncRNAs and mRNAs in AGPS-silenced U251 cells. The nodes represent signaling pathways, lncRNAs and mRNAs and the arrows (or edges) represent the interaction/regulation between nodes. Ex, expression; pho, phosphorylation; a, activation; ind(e), indirect effect; b(a), binding/association; ubi, ubiquitination; dep, dephosphorylation; c, compound; s(c), state change; inh, inhibition; lncRNA, long non-coding RNA; AGPS, alkylglycerone phosphate synthase.
Article Snippet:
Techniques: Transduction, Protein-Protein interactions, Expressing, Phospho-proteomics, Activation Assay, Binding Assay, Ubiquitin Proteomics, De-Phosphorylation Assay, Inhibition
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression levels of lncRNAs in glioma cells and its functional prediction
doi: 10.3892/ol.2020.11927
Figure Lengend Snippet: Effect of AGPS silencing on the expression levels of tumor-related mRNAs in glioma cells. Reverse transcription-quantitative PCR was used to analyze the mRNA expression levels of tumor-related mRNAs in AGPS-silenced U251 cells. *P<0.05 vs. control group; # P<0.05 vs. shR-AGPS-1 group. COL1A2, collagen I α2; COL6A3, collagen 6 α3; THBS1, thrombospondin-1; FN1, fibronectin 1; SPP1, secreted phosphoprotein 1; ITGA11, integrin subunit α11; VEGFA, vascular endothelial growth factor A; IGF1R, insulin-like growth factor 1 receptor; EGFR, epidermal growth factor receptor; TLN2, Talin 2; PXN, Paxillin; PIK3CA, phosphoinositide 3-kinase α; SHC3, Src homology 2 domain containing transforming protein 3; FGF2, fibroblast growth factor 2; ANGPT2, angiopoietin 2; CSF3, colony stimulating factor 3; IL-7R, interleukin-7 receptor subunit α; PRKAA2, protein kinase AMP-activated α2; DDIT4, DNA damage inducible transcript 4; HSP90B1, heat shock protein 90 kDa β1; CREB5, cyclic AMP-responsive element-binding protein 5; TLR3, Toll-like receptor 3; IL-1B, interleukin-1β; CXCL8, chemokine ligand 8; PTGS2, prostaglandin G/H synthase 2; SDC4, syndecan-4; shRNA, short hairpin RNA; AGPS, alkylglycerone phosphate synthase.
Article Snippet:
Techniques: Expressing, Reverse Transcription, Real-time Polymerase Chain Reaction, Control, Binding Assay, shRNA
Journal: Oncology Letters
Article Title: Effect of alkylglycerone phosphate synthase on the expression levels of lncRNAs in glioma cells and its functional prediction
doi: 10.3892/ol.2020.11927
Figure Lengend Snippet: lncRNA target pathway network in AGPS-silenced U251 cells. The regulatory core pathways of differential lncRNAs were identified using a lncRNA-gene-pathway network, indicating the association between lncRNAs and pathways in AGPS-silenced glioma U251 cells. Red represents the higher Degree values, blue represents the lower Degree values and purple represents the middle Degree values. AGPS, alkylglycerone phosphate synthase; lncRNA, long non-coding RNA.
Article Snippet:
Techniques:
Journal: Cell chemical biology
Article Title: Context-dependent regulation of ferroptosis sensitivity.
doi: 10.1016/j.chembiol.2022.06.004
Figure Lengend Snippet: Figure 4. Context-dependent role for ACSL4 in lipid peroxidation spreading during ferroptosis (A) HT-1080 control and ACSL4KO1 cells ± erastin2 (1 mM) for 10 h (Control) or 13 h (ACSL4KO1). C11, C11 BODIPY 581/591; Non-ox, non-oxidized; Ox, oxidized. Scale bar: 20 mm. (B–D) HT-1080 Control and ACSL4KO1 cells ± RSL3 (0.5 mM) for 2 h (B) or the indicated time points (C and D) prior to labeling with C11 and Hoechst. For (A)–(D), two or more independent experiments were performed, and representative images from one experiment are shown. See also Figure S4.
Article Snippet: Primary antibodies used were
Techniques: Control, Labeling